Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03823 ATGGCAAAGGTGTACAACTTGTTCCTTTTGTTGTGTTTTGTTGCTGTGATACCAACCTTGCATGCCAATATCTTAGCGAATACTACGTATGCGAAACAACATATCACAACAATTGACAATGAATATTGGAAAGAAAAGGCAGCAATTGCTAGAAAAATGAGTGAAGAAGCATATTTTCCTGATCCGCATGAACTTTCCAGAAATTTTACCTCTCTTATTACCGAAGACATAGCTGGTAACAACCATGTAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTGCATGTGAGGCAACCAATAACATTGATAGATGTTGGAGGTGTGACCCCAATTGGGCAGATAATCGCCAAAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAAAACTACTGGAGGAAAGGGGGGTCCAATCTACGTAGTTACTAGTCCTGCTGACAATGACATGGTTAATCCAAAACCAGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCGTAGCATGAATATTAGACTCAACCAAGAGCTCATGGTGTCTAGTAACAAGACAATTGACGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACCCTCCAATACGTCAGTAATGTCATCATCCATGGAATCAAGATTCATGATATTGTTCCCGGTACCGGTGGACTTATTAGGGATTCTGAGAGCCATTTTGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCTATCTTTGGTGCCAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCTCTGATGGTCTTATTGACGCCATTATGGGATCCACTGCTATTACCATCTCTAATAGTCATTTCACAGACCATAATGACGTGATGCTCTTTGGTGCCAATGACCAACACACAATTGATAAGGTGATGCAAATCACCCTAGTTTTCAACCACTTTGGCAAGAGATTAATCCAAAGAATGCCAAGGTGCAGATTTGGATTTGTTCATGTTGTCAACAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGCAAACCTACGATTATTAGTGAAGGAAATCGGTTCGTGGCTCCTGATAATAACAATGCTAAAGAGGTCACGAAGAGAGTAACCAATGATGATTGGAAGAATTGGCAATGGAGATCAATCAACGATGCGTTTGTTAATGGAGCATTTTTCGTACAATCTGGACCTGAACTCGTAGACAGGCCATTCTCAAGCAAGGACATGATTGCAGGAAAAGATGGTTCATACGTGCAAAGACTTACTTCTTTTGCTGGCTCCCTTAAATGTAGAGTTGGTAAACCTTGCTAG 1344 0.4107 MAKVYNLFLLLCFVAVIPTLHANILANTTYAKQHITTIDNEYWKEKAAIARKMSEEAYFPDPHELSRNFTSLITEDIAGNNHVRRNLNGQRAGVACEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRKTTGGKGGPIYVVTSPADNDMVNPKPGTLRHAVTRDGPLWIIFARSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVSNVIIHGIKIHDIVPGTGGLIRDSESHFGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDQHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSKPTIISEGNRFVAPDNNNAKEVTKRVTNDDWKNWQWRSINDAFVNGAFFVQSGPELVDRPFSSKDMIAGKDGSYVQRLTSFAGSLKCRVGKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03823 447 SUPERFAMILY Pectin lyase-like 100 438 IPR011050 -
Arst5g03823 447 SMART amb_all 174 371 IPR002022 -
Arst5g03823 447 PANTHER PECTATE LYASE 18-RELATED 50 445 IPR045032 GO:0030570
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Arst5g03823 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Arst5g03823 447 Pfam Pectate lyase, N terminus 35 87 IPR007524 GO:0030570
Arst5g03823 447 Gene3D - 99 440 IPR012334 -
Arst5g03823 447 Pfam Pectate lyase 182 365 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03823 Arst-Chr5 98795147 98797052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03823 5 447 Polysaccharide Lyase AT1G14420 56.399 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03823 K01728 - gmx:100810857 651.744