Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03813 ATGCATGGGTCCGGTCCTGAGGAGTGGAAACACAGCCGGCACATGTGGCCTGTACCTTCCAACGCCACCGCTGTAGCCCCTGATTCTTCACCGTCTGAATATATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCAGGATTCCCCACCTTTTATTGGAATAATTCGCAAGTTAATAGTTAATAAAGAAGAAAGTCCAACTTTAGAAGTGAATTGGCTTTATCGACATGCTGATGTGAATCTTGCCAAGGGCATATTGGAAGCTGCCCCAAACGAAGTCTTCTACTCCTATCACAAGGATGAAATATCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCGTTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCTTTTGTCTGCAGGCGAGTGTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAAGATTACATTAATGCTGTTCAGGAAGAAGTTGACCAGTTATTAGATAAGACAAAATTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCGCCAAAAGCTTTGAATGGTCCGACGACAACACAATCATTGAAATCTGGTTCTGATAGTGTTCAAAATAATTCTTCCCTTGGTGCACAGGTTAAGGGAAAAAAGAGAGAAAGGGGTGAGCAGGGGTCTGATCCATACAAAAGAGAGCGGTTATTTAAAGCAGATGATGGGGATTCTGTACAGGGTAGACCTGAGAGCATGTTGAAGTCTGAGATTGCTAAAATTACTGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTACAGCTCATGCAACCAGACAATGGTGATAAAAGAATAGATTTGGCTGGGCGAATTATGCTTGTTGATGTTATAGCAGCTACAGACCGTTATGACTGTCTTGGTTGGTTTGTACAGCTTAGGGGTTTGCCTGTGTTGGACGAATGGCTCCAGGAGGTCCACAAAGGGAAAATTAGTGACAGTAGTAACCATAAAGAAAGTGACAAATCTGTGGAGGAATTTTTGTTAGCGTTGCTTCGTGCATTGGATAAGCTTCCTGTTAACCTTCATGCATTACAAACATGCAATGTTGGGAAATCTGTCAATCATTTACGCACACACAAAAATTCTGAAATTCAGAGGAAAGCTAGGGGTTTAGTAGACACGTGGAAGAAACGTGTTGAGGTTGAAATGAATATGACTGATTCAAAATCTGGTTCTACTCGTCCTGTGTCATGGCAAGTAAAGCCAGCAGCTTCTGAGGTCTCTCATGTTGGAAATAAGAAAACTGGAGGACCGGAGAATGCTACAAAGGGATCTGCAATTCAACCTTCGGTATCTAAACCTTTGTTGGCTAAGCATGCTTCTGTGGAGGCCCTGTCCAAGTCCTCTTCAGCTCCTGGTTCAATTAAATCGATGACTACTTCAGTAAGCAGTACCTCTAAAGATCAAAATGTTAAGGTGGTAGTTGGCGCTGCAGCATCAGATCAACCGTTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAATCTCAGAACAACAGCTTTTCTTGTTCTAGTGAACATGCAAAAACTGGTGGGTCTTGCCGGGAAGATTCAAGGAGCTCCACTGCAGTGTCAATGAGTGTGAGCAAAATGCCCGGTGGTGCATCTCGAACCCGGAAGTCCAGCAATGGTATACATGGTACTGGTGTCGCTCTTGCTCAGAAGGAGCCCACTTCTGCAAAAAGTTCCACTAGAAATTCCCCTTCTGAAAAAGTTTCACCAACTCGAGTATCCCATGAAAAGTCTCCTGATCAGCCAACCGATCAAGGGAGTAATAATCAGCGTCTGATCCTTAGGCTGCCAAATACTGTTCGCAGTCCTTCACGAGGTGCTAATGGTAGCTCTTCTGAAGAACCTGCTATTCCTTGTGGGAAAGCTTCTCCTCCTTCTGACAAGAATGAGTCTCAGGATAGAAGAGTGAAGGCTAAGAATGATGGTTTGCATACCATTGCTTCATCAAATGTGATAACTGAGGCATGTGCTACAAGTTGTGAGGATCGTAACGGTTCTCCTCTGGGTGATGAACGGGGAAGGGTTAATGAAGATGGTGATAAAGTAGCAGAGACATCAAAACAAACTAATTCCCCTTCAGGTTTTATTTCCAGATCTGGGCAGACTTATGATGCATCTTTAAGCCCTATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTGCCTCTGTTTCGCCTGGAGATGATGGGATGAACTTACTTGCTACTGTTGCTGCAGGGGAAATATCCAGATCTGAAAATATCTCACCTCCAGCTTCACCTGAGGGGAAGTCATCTGCGGCAGATGAATCTAGTTCAGCCAATGTTTCCAAGCTAAAACATCCGGCTGAAACAGCTGCTCATACTGTTGCACAATCTGATGCAGTAGCTTCAGGAGAGCCTCAGTTTAGTGCTGTTGAGTCATTGCAATTTAAAAATGATTCAGGGCACCCTGTGACAACAATGTTGCGTGATTCTTCTGTAGACGAAGCTATTTCATCTAGTTGTAAAGAGAAATCTGGTGATAACAGAGCTCAAATAAATTGTTCAGCTGCAGATTTGTCACAAAATGCCGAAGCTGTATGCCCAGACTCTCAACCAGTGAAAGTTGACCACTTGGGTGAGACA 2706 0.4387 MHGSGPEEWKHSRHMWPVPSNATAVAPDSSPSEYICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLIVNKEESPTLEVNWLYRHADVNLAKGILEAAPNEVFYSYHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYINAVQEEVDQLLDKTKLEMHGAVQSGGRSPKALNGPTTTQSLKSGSDSVQNNSSLGAQVKGKKRERGEQGSDPYKRERLFKADDGDSVQGRPESMLKSEIAKITDKGGLVDFEGVERLVQLMQPDNGDKRIDLAGRIMLVDVIAATDRYDCLGWFVQLRGLPVLDEWLQEVHKGKISDSSNHKESDKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARGLVDTWKKRVEVEMNMTDSKSGSTRPVSWQVKPAASEVSHVGNKKTGGPENATKGSAIQPSVSKPLLAKHASVEALSKSSSAPGSIKSMTTSVSSTSKDQNVKVVVGAAASDQPLTPIKEERSSSSSQSQNNSFSCSSEHAKTGGSCREDSRSSTAVSMSVSKMPGGASRTRKSSNGIHGTGVALAQKEPTSAKSSTRNSPSEKVSPTRVSHEKSPDQPTDQGSNNQRLILRLPNTVRSPSRGANGSSSEEPAIPCGKASPPSDKNESQDRRVKAKNDGLHTIASSNVITEACATSCEDRNGSPLGDERGRVNEDGDKVAETSKQTNSPSGFISRSGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSENISPPASPEGKSSAADESSSANVSKLKHPAETAAHTVAQSDAVASGEPQFSAVESLQFKNDSGHPVTTMLRDSSVDEAISSSCKEKSGDNRAQINCSAADLSQNAEAVCPDSQPVKVDHLGET 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03813 902 ProSiteProfiles TFIIS N-terminal domain profile. 320 406 IPR017923 -
Arst5g03813 902 MobiDBLite consensus disorder prediction 409 456 - -
Arst5g03813 902 Gene3D - 22 246 IPR043151 -
Arst5g03813 902 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 886 - -
Arst5g03813 902 SMART TFS2_5 326 405 IPR003617 GO:0005634
Arst5g03813 902 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 886 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 188 216 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 777 827 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 881 902 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 695 714 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 690 733 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 610 641 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 409 423 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 179 251 - -
Arst5g03813 902 CDD TFIIS_I 328 404 - -
Arst5g03813 902 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 271 406 IPR035441 -
Arst5g03813 902 MobiDBLite consensus disorder prediction 657 671 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 468 492 - -
Arst5g03813 902 Pfam BAH domain 41 146 IPR001025 GO:0003682
Arst5g03813 902 MobiDBLite consensus disorder prediction 510 574 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 217 248 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 777 805 - -
Arst5g03813 902 MobiDBLite consensus disorder prediction 581 599 - -
Arst5g03813 902 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 416 IPR035441 -
Arst5g03813 902 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Arst5g03813 902 SMART BAH_4 40 154 IPR001025 GO:0003682
Arst5g03813 902 MobiDBLite consensus disorder prediction 506 673 - -
Arst5g03813 902 ProSiteProfiles BAH domain profile. 40 154 IPR001025 GO:0003682
Arst5g03813 902 MobiDBLite consensus disorder prediction 715 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03813 Arst-Chr5 98572143 98576299 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Arst5g03813 BAH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03813 - - adu:107490981 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03813 5 98572143 98576299 Arst5g03813 5 98572143 98576299 ECH