Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03563 ATGCTATTGATAAACACATATTCATCACTACCCACATATTCCTTCTCCTCCAATGCGCCATCACCTTCAACTCTTGCAGTTGCTACCTTGGGATTCTTCAGCACCACCGCCACACCTTCTAAGTTCCTCCGCAAAACAACAAGCCATAGTCACATCCCAAGTTTCGGTTTTCCCTCTACCAGGAACACCCCTTTTTCCCGTTATGCTTCGACCATCAGAGCCAAAGCTGGAACCACCGATTACTATTCCGTCTTGAATGTTAGCCGCAATGCTACTCTTCAAGAAATCAAGGCCTCCTATAGGAAGCTAGCTCGCAAGTACCATCCAGACAAACGTCCTGGGGCAGAGGAGAAGTTCAAGGAAATAAGTGCTGCATATGAGGTCCTATCGGATGATGAGAAAAGATCTTTATATGACCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGAGGGTCAGCCAGTGCTTCTGGGGTTGATCCGTTTGATTTATTTGATGCATTCTTTGGCCGCACTGATGGAAATGGAATGTTTGGAGAAAGTGATGAAGGGGGCATGAACTTCAGTTTTAGAAGCAATAGAAGCCGTGGCCTTGATATTCGGCATGACCTTTATTTGAGCTTTGAAGAATCAATTTTTGGAGTACGGAGGGAGATTGAAGTTTCTTGTTTTGAGCCATGTAATGATTGTGATGGTACAGGAGCTAAATCAAGGAATTGCATTAAAATATGTACAAATTGTGATGGCAGAGGAGGAGAAATGAAAAGTCAGAAAACACCCTTTGGAATCATGTCTCAGGTTTCTACCTGCTCTAAGTGTGGTGGTATTGGCAAGATAATCACTGATCATTGTCGAAGGTGTGAAGGCAGTGGTCAGGTGAAATCTAAACGAACAATGGAAGTGGTCATTCCTCCTGGTGCCAGTGATGGAGACACAACACAAATTCGAGGGGAAGGGAATTTTGATTCAAGGAGGCGTATAAGCGGGGATCTTTTTGTGGTTCTCCATGTAGATGAAAAGCAGGGTATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAATATTGACTTTACAGATGCAATACTGGGATCTGTTAAAAAGGTAGAAACTGTTGAAGGCTTAAGGGATCTCCAGATTCCATCTGGGGTTCAGCCTGGAGACTCAGTAAAGTTGTCACGTTTAGGAGTTCCAGACATGAATAGACCATCTTTTCGAGGCGATCATTACTTCATTGTGAATGTTCTGATTCCTAAAAATATCAGTGCTACCGAACGCATGCTTGTTGAACAGTTAGCCTCACTAAGAGCATCTAAATATGATTCATTGTCTTCTAAGGACACTGGGATATCCCAAGGAAAATTCAAAGAATTCAATACGGATCCAAAATATCAAGATTCAAGCAAGCGAACTAAACATGTTGGTTCACTGTGGACATCAATTCAGAATTTCTTAAGGAGAGGGCAGTCTGAAGAGAAGTTTGCATCAATTAGCTTGGATACATCGACGTCATATTGTAGATTCAGCCACCAAAATTATTCAGTCCTAGATTCCTTTGTTGTTTTCTTAATAATTTGTTTTTTAGCATCCATTGCAAACTCTAAGTATTCATTATTTAGGAAAAGAACCCAGTCCCTCATAAGAGAGCAGAGTGAGAACAATTGA 1665 0.4168 MLLINTYSSLPTYSFSSNAPSPSTLAVATLGFFSTTATPSKFLRKTTSHSHIPSFGFPSTRNTPFSRYASTIRAKAGTTDYYSVLNVSRNATLQEIKASYRKLARKYHPDKRPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGSASASGVDPFDLFDAFFGRTDGNGMFGESDEGGMNFSFRSNRSRGLDIRHDLYLSFEESIFGVRREIEVSCFEPCNDCDGTGAKSRNCIKICTNCDGRGGEMKSQKTPFGIMSQVSTCSKCGGIGKIITDHCRRCEGSGQVKSKRTMEVVIPPGASDGDTTQIRGEGNFDSRRRISGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGVQPGDSVKLSRLGVPDMNRPSFRGDHYFIVNVLIPKNISATERMLVEQLASLRASKYDSLSSKDTGISQGKFKEFNTDPKYQDSSKRTKHVGSLWTSIQNFLRRGQSEEKFASISLDTSTSYCRFSHQNYSVLDSFVVFLIICFLASIANSKYSLFRKRTQSLIREQSENN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03563 554 CDD DnaJ_C 199 421 - -
Arst5g03563 554 SUPERFAMILY Chaperone J-domain 76 179 IPR036869 -
Arst5g03563 554 Gene3D - 227 291 - -
Arst5g03563 554 CDD DnaJ_zf 227 291 IPR001305 GO:0031072|GO:0051082
Arst5g03563 554 ProSiteProfiles Zinc finger CR-type profile. 214 296 IPR001305 GO:0031072|GO:0051082
Arst5g03563 554 Pfam DnaJ central domain 227 291 IPR001305 GO:0031072|GO:0051082
Arst5g03563 554 CDD DnaJ 80 131 IPR001623 -
Arst5g03563 554 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 351 IPR008971 GO:0006457|GO:0051082
Arst5g03563 554 SMART dnaj_3 79 134 IPR001623 -
Arst5g03563 554 PRINTS DnaJ domain signature 134 153 IPR001623 -
Arst5g03563 554 PRINTS DnaJ domain signature 114 134 IPR001623 -
Arst5g03563 554 PRINTS DnaJ domain signature 82 100 IPR001623 -
Arst5g03563 554 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 437 - -
Arst5g03563 554 Pfam DnaJ domain 80 139 IPR001623 -
Arst5g03563 554 Hamap Chaperone protein DnaJ [dnaJ]. 77 458 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Arst5g03563 554 Gene3D DnaJ domain 77 180 IPR036869 -
Arst5g03563 554 SUPERFAMILY HSP40/DnaJ peptide-binding domain 345 428 IPR008971 GO:0006457|GO:0051082
Arst5g03563 554 Gene3D - 344 435 - -
Arst5g03563 554 ProSiteProfiles dnaJ domain profile. 80 142 IPR001623 -
Arst5g03563 554 Pfam DnaJ C terminal domain 200 418 IPR002939 -
Arst5g03563 554 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Arst5g03563 554 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 214 294 IPR036410 -
Arst5g03563 554 Gene3D - 197 333 - -
Arst5g03563 554 FunFam Molecular chaperone DnaJ 219 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03563 Arst-Chr5 94706169 94711080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03563 81 139 C2H2 Transcription Factor Family AT1G74250 41.791 3.87e-08 54.3