Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03470 ATGGACCCATCCTCGATCCCTCCATCAGCAGGTCCGGCCACCAACACCCTCCCCATGCCAACCATCCCCGCCACCGTGCCCTTCCTCCAGGAGCCGAACAACCACTCTCCTCCGCCGCCGGCCAGCACCGGAACGAACGCTGCTCCCAGCCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAAGCGCTGAAGGAGAAAGAGGGTTCGAGCAAGAGAGCGATAGCGAAGTACATAGAGCAAGTGTACAAGGAGCAGTTACCACCAACTCACTCGACTTTGCTCACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTTCAAATGGTCAAGAAATCATATAGGCTTCCTAGATCTGCTGACGCTACCGACCCTAACCCTTCTCCTTCTGGGTCCTCCAGGCCCAGGGGACGCCCTCGTAAGGCCCAGATTCAGCCCCAGCCCCAATCACAGCTCCCCCAGCTTGAGGCACAGCCTCAGCCACAGCTGGCTGGGAATGTTAATGTTAATGTCCCTCAGCAGCAGCAGCAGAATGCTGAGCCTGTGTGGGCCGCGCTAGGGCTTGCAGATGAGCCTGCGGTGCAGCCTGGCTCGGAGCTGAAGAAGAGGGGTCGTCCGAAGAAGAATGAGGTTGCACCAGGTGCTGCGGAGACGCCAAATACAAGCCTGGCTGTTGCTACGCCGGGTCGGAGAGGGCGTCCTCCGGGCTCGAAGAACTCGAAGAGGAAGCCTGGTCGTCCTCCGAAGGCTTCGCCTGCTGGTGGTCCGGCTGCTGCTTCCGGCCGACCGGCCAAGAATCAGCAAGTGGCGACTCCTGTTACGTTCGCTGCTGTTTCTGATCCTGACGCCGCTGTGACTGCATTGCCGCCGGCTCCCGTGGTTGTGCCTGCCGGTGGTGTTCCTGTTGCTGGGTCTCCCAGGCCCAGGGGACGCCCGAAGAGGATTCTTGGTGAGGCTGTCACGGGTGCTATAATTCCTGTTGCTGTCGGTGCCACTGGCCGCGGAAGGGGCCGCGGACGTGGACGCGCTCGCGGTTACGGCTTCGGTACCTTCGGACGTGGACGTGGTCGCGGGCGTGGAAGGCCAGTTGGCCGCCCGAGGAAGGATATAATATTGGCGGGTACTTCACAAAATGAAGATCTCCGGAGGAAGCTTGAACACTTCCAAGCAAAAGTGAAGGAATCTCTGGCCGTGCTTAGGCCTTACTTCAACCATGAAAGTCCAGTAACTGCACTTGCAGCACTCCAAGAATTGGATGTACTGGGAACTATGGACCTCAATGCACCCCTAAGAGATGAAACTATTCCTCAACAACCACAGCAGCAGCTGCCTCTGCAGCAGCAGCCGCCACCGATGCAGCCGTCGCCATCACCACCACCACCACCTCAACCGCACCAGCAGCTGCCACAACCACAGCTCATGTTCCCACAGCAATTCCACCAGTTTAACCTGCCGCAGTTCCAGCAGCAGCCCCCGCAGTATCAGCACCAACACCAGCCCCCACCCCAGCAGCAACTGTTCCATCCATAG 1536 0.5918 MDPSSIPPSAGPATNTLPMPTIPATVPFLQEPNNHSPPPPASTGTNAAPSHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKEQLPPTHSTLLTHHLNRLKNNGMLQMVKKSYRLPRSADATDPNPSPSGSSRPRGRPRKAQIQPQPQSQLPQLEAQPQPQLAGNVNVNVPQQQQQNAEPVWAALGLADEPAVQPGSELKKRGRPKKNEVAPGAAETPNTSLAVATPGRRGRPPGSKNSKRKPGRPPKASPAGGPAAASGRPAKNQQVATPVTFAAVSDPDAAVTALPPAPVVVPAGGVPVAGSPRPRGRPKRILGEAVTGAIIPVAVGATGRGRGRGRGRARGYGFGTFGRGRGRGRGRPVGRPRKDIILAGTSQNEDLRRKLEHFQAKVKESLAVLRPYFNHESPVTALAALQELDVLGTMDLNAPLRDETIPQQPQQQLPLQQQPPPMQPSPSPPPPPQPHQQLPQPQLMFPQQFHQFNLPQFQQQPPQYQHQHQPPPQQQLFHP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03470 511 MobiDBLite consensus disorder prediction 198 212 - -
Arst5g03470 511 FunFam Histone H1.2 47 128 - -
Arst5g03470 511 PRINTS AT-hook-like domain signature 306 316 IPR017956 GO:0003677
Arst5g03470 511 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Arst5g03470 511 PRINTS AT-hook-like domain signature 200 211 IPR017956 GO:0003677
Arst5g03470 511 MobiDBLite consensus disorder prediction 472 511 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 1 52 - -
Arst5g03470 511 SMART AT_hook_2 308 320 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 339 351 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 358 370 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Arst5g03470 511 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Arst5g03470 511 MobiDBLite consensus disorder prediction 196 275 - -
Arst5g03470 511 Pfam linker histone H1 and H5 family 51 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g03470 511 MobiDBLite consensus disorder prediction 7 31 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 119 161 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 145 161 - -
Arst5g03470 511 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g03470 511 CDD H15 48 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g03470 511 Gene3D - 46 128 IPR036388 -
Arst5g03470 511 MobiDBLite consensus disorder prediction 445 471 - -
Arst5g03470 511 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
Arst5g03470 511 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Arst5g03470 511 Coils Coil 380 400 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 32 46 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 336 368 - -
Arst5g03470 511 PANTHER HISTONE H1 34 254 - -
Arst5g03470 511 MobiDBLite consensus disorder prediction 441 511 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03470 57 169 Single Myb Histone (SMH) Gene Family AT1G49950 30.252 2.51e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03470 - - lang:109358509 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03470 5 93624141 93631740 Arst5g03470 5 93624141 93631740 ECH