Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03411 ATGGCTGTTGTAACAGAACAAGATATGAAATGGAGAAGAGAGAGGAACAAGTTGAGGCAGCAGCAAGTCCCTTCCATGACCCAAACCACAAGCTGCAAATCCACCATATCTTCTCTCATCCTCTCCTCTTTCTCCAATGAAACCGCCACAAACAAGAACAAGAGTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAAGTAGTCTCAGTTCCTGCTGTGATTCGATCCTCTGCTGATTGGAAGAACACTAGGAAGAACAACAAGTGCAGAAGGAGGAACACTGAAAAAAGCAGCATAACATGTCACCATAAACATGCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTTGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAATACATAGGGAAGAGCGTCCTCCGCCTTATTTGGGAAGACGCACCATGAACACAGGCTTCTCTTTCTTGGATGATGATCAAGGCATTTTCGTGACACGCCCTGGATCGGAGTCTTTCGCTGCCGGTAGATACTATCGCCACGTTCCGCATCCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTATTAATGGGTGGAAGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGTTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAACATAAGGAAGATTAAGCATGTAATTTCAAATAATCATTCAAAGCATCAAATAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAGGCTGATGATGAAATTGGGAGGCTAACTTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAGAACTTCTGTCCTGTTTGTAAGCAAGAAGTTGTAGTTCGACACTGA 1026 0.4308 MAVVTEQDMKWRRERNKLRQQQVPSMTQTTSCKSTISSLILSSFSNETATNKNKSTFRGLGCTAASASSQVVSVPAVIRSSADWKNTRKNNKCRRRNTEKSSITCHHKHASSSSSFQDVWCGPGIGFASDHASASVDCVVARKNASSRRNLDAVERAIHREERPPPYLGRRTMNTGFSFLDDDQGIFVTRPGSESFAAGRYYRHVPHPSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNHSKHQIDKKCSICQEEYEADDEIGRLTCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03411 341 FunFam E3 ubiquitin-protein ligase rnf12-A 260 339 - -
Arst5g03411 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 43 337 IPR045191 GO:0061630
Arst5g03411 341 Pfam Ring finger domain 292 334 IPR001841 -
Arst5g03411 341 SUPERFAMILY RING/U-box 292 339 - -
Arst5g03411 341 SMART ring_2 293 333 IPR001841 -
Arst5g03411 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 340 IPR013083 -
Arst5g03411 341 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03411 Arst-Chr5 93001002 93004724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03411 7 248 C3H Transcription Factor Family AT1G73760 37.687 6.10e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03411 - - ahf:112751066 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03411 5 93001002 93004724 Arst3g05293 3 128040467 128042565 ECH
Arst5g03411 5 93001002 93004724 Arst5g03411 5 93001002 93004724 ECH