Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03365 ATGGATAATCATATCGATATCCATATGCATATCCCCGTAAGGAGCATGATATTTTTGGTGTTGCTAATAAACAGTTTGACACCATCGCTTTCTCAACAACCACTTTCCAACCGCTACTTCCTTTGCAAGAAACAGCTGTACAACTGCGGAACCATTTCCAACATATCCTATCCTTTCTGGGGAGTAGACCGGCCGCGGTACTGCGGCGGTGGCGACCAATTCAACCTCACCTGCGAGCTTGGAACTGGCCAGTTCGCTTCCATTCAAATCGCCTCACAGAAATTCCAGGTGATCCATATTGATAGCGTACAGAACAAGATGAGAATGATACCCATGCCACCAATCGTGAAACACGAATTTTGTTCCATGAAACGCGACTTCAACCTGAGTAGCCCCTCCTTCTGGTACTCGGAAACTGTCCAGAACATCACCATATTCTACGATTGTCCCGCTGGATTTTCCAACTTCACGTGTCCGTCCTCATCAAATCATCGGAACAAAAAGAATAATAATGTTGTGTTCTATGAGGGTGTGGAAGAGCAGGTGTTGAAAGAGCACCCGGAGCTGAAGGAATGCGGGCGTAGTTTGCGTGTGGCAACTGATGAGGGTGCTCTGCACCCTAATGTTACAGTTGATAATCAAATCATTGAAGCCCTGAATTGGGGTTTCCATGTGAACTATAGTTTCCCAGAAGAATGCAAGAGATGCATGAGGAGTGAGGGAGTTTGTGGAAGCAATAATGCTTACCCAGACGGATCTAACGCTGCCCTCTCTTGTTATCTTCCACGTGGCGCAATGGCAGGTAATCGTTGGCAATGGAAATTAAGGCATATCATAGTAGGTTTTATAGCCATAGTGATTCCAGGATTAGTGTTGATATATATCTGTACAGTTTGTTGCTTAAGATACAAATCATCCAGCTGGGAAGAAGTATTTTGGTTCACAACGAAAAGTAACCAAGATATTGAAGCAATCCTAAAAAGTCATGGAGCACTAAGTCTCAAAAGATATAAATTCTGCGATGTGAAGAAAATGACTAGCTTCTTCAAAGTTAAACTTGGACAAGGTGGTTTTGGTACTGTATACAAAGGAAAGCTACTAAATGGTTCTGATGTGGCTGTAAAAATATTGAATCTCTCCAAAGGAAAGGATAAAGAATTTATCAATGAAGTAGCTAGCATTAGCAAAACATCTCACATAAATATTGTTACCCTTTTTGGGTTTTGCTTAGAAGGTAACAAAAGAGCACTTATTTATGAGTTTATGTCTAATGGTTCTCTTGATACATTTATTTACAAAAAGGGACATGATGAAGGCACTCCATCCTTGAATTGGGATCAGTTATATCAAATTGCAATAGGAATAGCTAAAGGGCTAGAGTATTTGCATAAAGAATGTAACATTCGAATTTTTCATTTTGACATAAAGCCGCATAATATTCTTTTGGATGAAAACTTTTGCCCTAAGATATCAGATTTTGGGCTAGCAAAACTCAGTCTTAGAAGTGATGACAGTGTCATTTCCATGTCCGATGCTAGAGGAACCATGGGATATGTGGCTCCAGAAATGTGGAATAAACATCTTGGTGGAATTTCTCATAGATCAGATGTTTATAGTTATGGAATGATGCTACTAGAAATTGTGGGCGGAAGAAAGAACATTCATGCAGAAGCAAATCACACAAGTGAGATATATTTTCCTTATTGGATACACAAAAGGCTTGAACAAGGCACTCAATTGGGCAATAACGAAAACATTGGCATTGCAGAAAATGATATTGTCAAAAGAATGACTATAGTGGGTTTATGGTGCATTCAAACGTTGCCAAATGATAGGCCATCAATAAGTAGAGTTATAGATATGTTGGAAGGCAGCATGGAATCTTTGGAACTTCCACCTAAACCAATTCTATCTGCTGCATGA 1923 0.4004 MDNHIDIHMHIPVRSMIFLVLLINSLTPSLSQQPLSNRYFLCKKQLYNCGTISNISYPFWGVDRPRYCGGGDQFNLTCELGTGQFASIQIASQKFQVIHIDSVQNKMRMIPMPPIVKHEFCSMKRDFNLSSPSFWYSETVQNITIFYDCPAGFSNFTCPSSSNHRNKKNNNVVFYEGVEEQVLKEHPELKECGRSLRVATDEGALHPNVTVDNQIIEALNWGFHVNYSFPEECKRCMRSEGVCGSNNAYPDGSNAALSCYLPRGAMAGNRWQWKLRHIIVGFIAIVIPGLVLIYICTVCCLRYKSSSWEEVFWFTTKSNQDIEAILKSHGALSLKRYKFCDVKKMTSFFKVKLGQGGFGTVYKGKLLNGSDVAVKILNLSKGKDKEFINEVASISKTSHINIVTLFGFCLEGNKRALIYEFMSNGSLDTFIYKKGHDEGTPSLNWDQLYQIAIGIAKGLEYLHKECNIRIFHFDIKPHNILLDENFCPKISDFGLAKLSLRSDDSVISMSDARGTMGYVAPEMWNKHLGGISHRSDVYSYGMMLLEIVGGRKNIHAEANHTSEIYFPYWIHKRLEQGTQLGNNENIGIAENDIVKRMTIVGLWCIQTLPNDRPSISRVIDMLEGSMESLELPPKPILSAA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03365 640 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Arst5g03365 640 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Arst5g03365 640 Gene3D Transferase(Phosphotransferase) domain 1 422 630 - -
Arst5g03365 640 PANTHER RUST RESISTANCE KINASE LR10-RELATED 318 636 IPR045874 GO:0004672
Arst5g03365 640 SUPERFAMILY Protein kinase-like (PK-like) 336 623 IPR011009 -
Arst5g03365 640 Pfam Protein tyrosine and serine/threonine kinase 350 621 IPR001245 GO:0004672|GO:0006468
Arst5g03365 640 FunFam serine/threonine-protein kinase PBS1-like 315 421 - -
Arst5g03365 640 ProSiteProfiles Protein kinase domain profile. 347 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst5g03365 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Arst5g03365 640 Pfam Wall-associated receptor kinase C-terminal 158 260 IPR032872 -
Arst5g03365 640 FunFam PR5-like receptor kinase 422 634 - -
Arst5g03365 640 Pfam Wall-associated receptor kinase galacturonan-binding 42 109 IPR025287 GO:0030247
Arst5g03365 640 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03365 Arst-Chr5 92297584 92302439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03365 39 637 Receptor kinase-like Gene Family AT1G66910 36.693 2.78e-123 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Arst5g03365 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03365 - - adu:107490378 614.379