Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03336 ATGATGGCTCATCACCAATTCACAGAAGATTTTCAAAGCATGATCATGAAACCTTTCTTGGATATTGATCCAAGCATGGATCTCATCAACCAGTTCATAGGTTTGAACACAACAACAACAACAACAACACATATGAACATGTGTGACAACTTGTTTGGATCTCATCATCATCATCATCATCATCAAGATGATTTTCCAGGAAACTTGGAAGAAAGTTTCCATCAAAATCATCATCATCATGTCAACAACAACAATGCATCATCAGTAGTAGTCCCAGTAATTTCTTCTTCCCTTCTCAATTATTATCCATCAGAAAATGAAGAAATCCATGAAGGTAAAAAGAGAAAAGCAACTACTTCAGGAAACTCAACTCCTGCAGCTTCTCATCATAGTGAAAGCAAGATTATTAAAAATAATGGTTGTGGTGGAAAAGGTAAGAGAGTGAAGAGCAATAAAACAGAAGAAGAAGAGGAGAAGAAACAAAAGGAAGTGGTTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCACAGCATAGCTGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAATTAAGGTGCCTGCAAAACATTGTTCCAGGATGTTACAAGACCATGGGCATGGCGGTTATGTTGGATGAAATCATAAACTATGTTCAATCCTTGCAACATCAAGTAGAGTTCCTTTCTTTGAAGCTCACAGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCGAGGGCATCCGAGGCAAAAGAGTTAGGCAAGTATGGGAAAGAAGGGCATGGAGGAGTTTCTTGCTATCAACCAAATTGGCCTCTTGTTTGA 858 0.3858 MMAHHQFTEDFQSMIMKPFLDIDPSMDLINQFIGLNTTTTTTTHMNMCDNLFGSHHHHHHHQDDFPGNLEESFHQNHHHHVNNNNASSVVVPVISSSLLNYYPSENEEIHEGKKRKATTSGNSTPAASHHSESKIIKNNGCGGKGKRVKSNKTEEEEEKKQKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYGKEGHGGVSCYQPNWPLV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03336 285 CDD bHLH_AtBPE_like 164 248 - -
Arst5g03336 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 239 IPR036638 GO:0046983
Arst5g03336 285 Gene3D - 169 240 IPR036638 GO:0046983
Arst5g03336 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 250 IPR024097 GO:0006355
Arst5g03336 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Arst5g03336 285 FunFam transcription factor BEE 3-like 170 241 - -
Arst5g03336 285 MobiDBLite consensus disorder prediction 107 163 - -
Arst5g03336 285 MobiDBLite consensus disorder prediction 118 135 - -
Arst5g03336 285 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Arst5g03336 285 SMART finulus 179 229 IPR011598 GO:0046983
Arst5g03336 285 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03336 Arst-Chr5 91889068 91891010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03336 7 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 46.465 8.86e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g03336 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03336 - - adu:107490384 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03336 5 91889068 91891010 Arst5g03336 5 91889068 91891010 ECH