Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03311 ATGAAATTCATGACATGGGTCTTGGAGGTTTCACATTCAGTTCACATTTCCCTTGAGAAAGGAATGAAATGCAAGAGAGGAACAGAAGGAAATTTGAACATTATGAGGAGAATTAGAATAATTTATAGTGACCCATATGCAACAGATTGTTCAAGCGAAGAAGATGACAATTTTTTGAGCAATCACTATGAACAACATGGTCCTAAGAGATTCATCAGAGAAATCTTGGTTCCATGCATGCCAACCGAATCGTATGAAGTGGATGATGATGATTCTTTACAACAAGGTATCAGCATTGACAAAATCAAACCATGTCTTAACCTTTTGCGAAACCATAGGAGCCGGAGATCATCCAGCAAGTACAGAGGTGTTCAAAGAAGGAAATGGGGGAAGTATGTGGCAGAAATCCGAGACCCCATCCGAGGCGTGCGAGTGTGGCTTGGTACTTTCAATACGGAGGAAGAAGCTGCCATCGCTTATGAGAAGAAGAGAATTGAATTTGTGAACTCATTGCTGGCTTTGAGGAGAATGGTTGGTGTATTGGACTTAGAAGATGGCAATCAAGTGTTGTCTCATCCATCCCCAGCATCCGTGCTTGATGTCGCGGCGACAAGAGCATCATCTGATAATGATAGCAATGGTCCAGTTGTTGAAGGAAAGGACAATGTGGAAACAAGTGCTATTGAAGGTGTAATGGAACCTGTTCATGCGGAAGATCATCATTCATTTCAGCATTTGCTTGAGGAGTCAATTGTGCAATCACTGCTTGGGTATGAATTTGATAGTTTCTTGGTCAATGACAATGGTGGCTGTGCTATGTGGGATGTGAAAGATGGTGAAGGTAGCAGCACTCTTCCACATATTGAAACTGCTTTTGATGATTCAGAGTTGACTTGGTTTGATGAAACTCTGAATTTGTAA 921 0.4148 MKFMTWVLEVSHSVHISLEKGMKCKRGTEGNLNIMRRIRIIYSDPYATDCSSEEDDNFLSNHYEQHGPKRFIREILVPCMPTESYEVDDDDSLQQGISIDKIKPCLNLLRNHRSRRSSSKYRGVQRRKWGKYVAEIRDPIRGVRVWLGTFNTEEEAAIAYEKKRIEFVNSLLALRRMVGVLDLEDGNQVLSHPSPASVLDVAATRASSDNDSNGPVVEGKDNVETSAIEGVMEPVHAEDHHSFQHLLEESIVQSLLGYEFDSFLVNDNGGCAMWDVKDGEGSSTLPHIETAFDDSELTWFDETLNL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03311 306 Pfam AP2 domain 119 167 IPR001471 GO:0003700|GO:0006355
Arst5g03311 306 ProSiteProfiles AP2/ERF domain profile. 120 184 IPR001471 GO:0003700|GO:0006355
Arst5g03311 306 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 167 - -
Arst5g03311 306 SMART rav1_2 120 174 IPR001471 GO:0003700|GO:0006355
Arst5g03311 306 CDD AP2 120 167 IPR001471 GO:0003700|GO:0006355
Arst5g03311 306 Gene3D AP2/ERF domain 119 171 IPR036955 GO:0003700|GO:0006355
Arst5g03311 306 SUPERFAMILY DNA-binding domain 119 169 IPR016177 GO:0003677
Arst5g03311 306 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Arst5g03311 306 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03311 Arst-Chr5 91450836 91452332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03311 16 167 AP2-EREBP Transcription Factor Family AT1G68550 35.542 5.81e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g03311 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03311 - - aip:107642108 557.755