Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03236 ATGGTGTCGATTAATGGGATGGAGCAGAACAACGTGATCGCACCGTTCGTTATAAAGACATATCACATGGTCAACGATCCGAGCACCGATTACCTTATAGCATGGGGCCCAGCGAACAACAGCTTCATCGTCGTCGACCCTCTCGACTTCTCTCAGTCTCTACTCCCTGCCTTCTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCAGATAAGTGGGAGTTTGCAAACGAGTGGTTTCTGAGAGGGCAGAAGCACTTGCTGAAGAATATAGTTAGGAGGAAGCACGGCACGAGGAGCTATAATTCTTTGCATTTCAACAACCACCACCACGGTGGCAAGCAGCAGATTTTAGCGGCGGAGGAGCTCGACGATGAAGCCATGATGGTGGAGATAGCGAGGCTGAAGGAGGAGCAGAAGGCTTTGGAACAAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACAACCGAGAAGAGACCACAGCAAATGATGGCTTTTCTATGCAAGGTCGTCGAGGATCCCGAGGTTCTATCCAGGGTTCTTCTTGAGAGGGAGACCAGGCAAATCGCCGACAAGAAGCGCCGCCTTATCACGGCTGCGACCTCCTCGTCTTCGTCTTCTGGTGTTGCCGTCAAGACGGAACTCGAGGAGGAGGAACCAACTGTCGGGAATATAATATCTTCTTCGCCGGAAACCGGCTTCGAAATTGATAATTTTTGCCACGTGGCGTCGCCGTCTCCGCCGCAGGAGGCGGCGCCGGTGGCCATGGGGTGGTTGGGGCAGCCGCGGCCGAGGATTGGTCATCACTACCAACAGCAGGGGCATAATGGATATAGAAGTTATAATAACAATTATAATTATAGTTCCGCCGCCACACCAAAGCCGTTGACGGTGGTTCCTCCGACGGCGCCGCCGCAGGGTAATGGCACTGGTGGAGGTAAAGGTCACGTGAACTTTTTTAGTGAAATGGCGGCGGAGAATAGTCCACGGCCACCTTATCCGTTTTCACTATTAGAAGGTGGATTCTAA 1062 0.5179 MVSINGMEQNNVIAPFVIKTYHMVNDPSTDYLIAWGPANNSFIVVDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHGTRSYNSLHFNNHHHGGKQQILAAEELDDEAMMVEIARLKEEQKALEQELQGMNKRLETTEKRPQQMMAFLCKVVEDPEVLSRVLLERETRQIADKKRRLITAATSSSSSSGVAVKTELEEEEPTVGNIISSSPETGFEIDNFCHVASPSPPQEAAPVAMGWLGQPRPRIGHHYQQQGHNGYRSYNNNYNYSSAATPKPLTVVPPTAPPQGNGTGGGKGHVNFFSEMAAENSPRPPYPFSLLEGGF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03236 353 FunFam Heat stress transcription factor B-4 8 106 - -
Arst5g03236 353 Coils Coil 136 170 - -
Arst5g03236 353 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g03236 353 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g03236 353 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g03236 353 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Arst5g03236 353 Gene3D - 8 106 IPR036388 -
Arst5g03236 353 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g03236 353 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst5g03236 353 MobiDBLite consensus disorder prediction 219 238 - -
Arst5g03236 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 228 IPR027725 -
Arst5g03236 353 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03236 Arst-Chr5 90008231 90009648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03236 12 215 HSF AT3G24520 63.462 2.95e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst5g03236 HSF_DNA-bind 5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03236 K09419 - gmx:100794896 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03236 5 90008231 90009648 Arst5g03236 5 90008231 90009648 ECH