LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst5g03227	ATGTCAACCTCTCCCGCCACTCCATCGACCTCTCCGCCATCGCCGCCGGCTCCGTCCTCTGGCGGGAACACCACTCCCAGTCCGCCGTCTCGTAGCTCTCCTTCTCCCCCATCTTCCGGCGGCAAAACAACACCTTCGTCCAAGTCACCGTCGTCGTCGTCGTCCCCATCTCCACCGTCGTCGTCTTCTTCTTCAGGCATTTCCACGGGAGTTGTGGTCGGAATCGCCGTTGGTGCTGTGGCAGTTCTTGTGGTACTGAGCGTTCTTTGCATATGCTGTAGGAAGAAGAAGAGAAGACGCGACGAGGAGCAATATTACGGCTACCCACCACCCCAGCCGCCGCCACGTGGACCCAAAGATGACTATGGTGGTCCCCCACGCCAGTGGCAGCACAATGCTCCACCTCCTTCAGATCACGTGGTCTCAGTCCAGCCACCTAAGCCATCGCCTCCGCCTCCGCCTGTGTACCAAGCTCCACCACCACCTCCACCTTTCATGAGCAGCAGTGGCGGTTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCAGGCATAGCATTAGGCTTCTCAAAGAGCACTTTCACATATGAGGAGCTGGCACGAGCAACCGATGGCTTCTCGGACGCCAACCTCCTCGGATCAGGTGGATTCGGGTATGTGCACAGAGGAATTCTTCCCAACGGCAAGGAAGTAGCCGTGAAGCAGCTAAAGGCTGGAAGCGGGCAAGGAGAGCGTGAATTCCAAGCTGAAGTAGAGATAATTAGTCGTGTTCATCACAAACACCTTGTTTCTTTGGTTGGATACTGCATCACCGGGACCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACGTTGGAATTCCATTTACACGGGAGAGGGCGACCTACGATGGATTGGCCCACAAGACTACGAATTGCTTTAGGATCTGCTAAAGGGCTGTCATATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGCGATATCAAAGCTGCTAACATTCTTCTCGATTTTAAGTTTGAAGCTAAGGTTGCTGATTTCGGGCTTGCAAAGTTCTCTTCTGATGTCAACACTCATGTTTCCACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCGGAATATGCTTCCAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTCGAGTTAATTACTGGAAGAAGGCCAGTTGATAAAACCCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCAACCGGGCATTGGATGAAGATGATTATGACTCTCTAGTTGACCCAAGGCTCCAGAATGAATATGATCCCAATGAGATGGCTCGCATGGTGGCATGTGCCGCTGCTTGCACGCGTCATTCAGCAAAGCGTCGACCAAGGATGAGTCAGGTTGTTCGTGCTCTTGAAGGAGATGTGTCTCTGGCGGATCTTAATGAAGGAATTAAACCTGGACACAGCACCATGTACAGTTCACATGAAAGCTCGGATTATGACACTGCACAGTACAAGGAAGACATGAGAAGGTTCAGGAAAATGGCATTGGGAACCCAGGAGTACGCCAGCAGCGAGTATAGCGCGCCTACAAGCGAGTACGGCCTGTATCCATCCGGCTCAAGCAGTGAAGCACAGAGCCGCCAGACCACCCGCGAAATGGAACTGCGGAAGATGAAGAACAGTCAAGGTTTCAGCGGAACTTCTTGA	1746	0.5166	MSTAPAPSSPPAGNSTAPPPSTPATPSAPAPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSAPPPATPSASPPPATPSTPSTSPPKSSPATPSTSPPSPPAPSSGGNTTPSPPSRSSPSPPSSGGKTTPSSKSPSSSSSPSPPSSSSSSGISTGVVVGIAVGAVAVLVVLSVLCICCRKKKRRRDEEQYYGYPPPQPPPRGPKDDYGGPPRQWQHNAPPPSDHVVSVQPPKPSPPPPPVYQAPPPPPPFMSSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGSGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLSYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLNRALDEDDYDSLVDPRLQNEYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTAQYKEDMRRFRKMALGTQEYASSEYSAPTSEYGLYPSGSSSEAQSRQTTREMELRKMKNSQGFSGTS	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst5g03227	671	ProSiteProfiles	Protein kinase domain profile.	300	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst5g03227	671	Pfam	Protein tyrosine and serine/threonine kinase	305	573	IPR001245	GO:0004672\|GO:0006468
	Arst5g03227	671	SMART	serkin_6	300	536	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	126	158	-	-
	Arst5g03227	671	FunFam	proline-rich receptor-like protein kinase PERK1	278	375	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	190	280	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	197	211	-	-
	Arst5g03227	671	FunFam	Proline-rich receptor-like protein kinase PERK1	376	584	-	-
	Arst5g03227	671	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	168	633	IPR047117	-
	Arst5g03227	671	ProSitePatterns	Protein kinases ATP-binding region signature.	306	328	IPR017441	GO:0005524
	Arst5g03227	671	Gene3D	Phosphorylase Kinase; domain 1	280	375	-	-
	Arst5g03227	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	420	432	IPR008271	GO:0004672\|GO:0006468
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	229	257	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	624	651	-	-
	Arst5g03227	671	SUPERFAMILY	Protein kinase-like (PK-like)	277	573	IPR011009	-
	Arst5g03227	671	Gene3D	Transferase(Phosphotransferase) domain 1	376	584	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	624	671	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	1	158	-	-
	Arst5g03227	671	MobiDBLite	consensus disorder prediction	11	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst5g03227	Arst-Chr5	89785248	89788739	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst5g03227	124	654	Trihelix Transcription Factor Family	AT1G70460	51.028	1.18e-177	521

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Arst5g03227		PK_Tyr_Ser-Thr	5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst5g03227	-		-	gmx:100781944	850.892