Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03194 ATGACTACAGCCGTCACGGCCGCCGAGATTCTCCGCCACACCACCGCCTTCCTCTCCGACGTCATTTCCAACCGCGATCTCCGCCACCGCCTAATCTCCATCCTCCACCGAGACACCACCACCGCCGCAATCTCCGACGAATCTGCCGCAAAACTCGCCGCGGATACTCTTGAAACCGCGATCATGCTCTCCAACTTCGCCTCCCGCTCCTGCTCCCTTTCCCTTGCTGAGAAGCTCCTCCTCCCTCTGTCCGACCACCCGCTTCCTTTCTTCCTCCTCTCACTTGTCCACACCCTCCACAACCGCCACCTCGATGCCGCTGTTTCTCTCCTCCGTTTCTTCCGTTCTAACCCTTCCCTCGCCCGATCGGAGATCGCACCGGTCCTCTACGACCGTCTTTTCTCCCTACAGCTACTCTCCGTGTTCCGGTGGCTGCTGGAACGGAGAGCGCAGATCCTCTCATCATCTTCAGTTTCGGAAGACGCTACTCACTCGCTGTCGAAGGTGAGCGAGGAGCAGGCGTCGAAACTGAGGGAGCTGGAGAGAGAGTACGAGGAGATTCTCGATGAGAATTGCAGGGCTGTTGCGGCGCGTTTCGAAGAGGTTTTGGCCAGTGAAAATGCGTCCATTAGTCCACCATTGCTGGCGAGGAAGAGCTCCGGGGAAGCCGGCGGGGCGGAGAACAATGTGGAGGTGGAGGAGGACGAGGAGGAGCAGTTAGTGATGGAGGAAACAGAAATGATTGCGTTGAAGAGCGGACACTACGATAATCCAATATGGAGCGAAAGGGAAGAAGCCTCCATTGAGTTTTTGAGCAGTGGTTCTTGCAGCAATTCCTCCTACGCACCATTTTATCCACGAAGAGTCTCTCCCACAATCCTCAAACCCCAAAACTCTTCACAAAACTTGGCATCACTCGCTGATGAAACCGAGTCTTCATTGGTTGACAAGAGTTTGACTAGTTCCTCCTCAGAATCAGAAGCAGAAAGAGAGATCACTAGTACTTCATGTTCGAAAAGGACCCCGAATCTGGTTAGAACCGGAAACAAATCCTTGAGTACTCCCAAAATCCTTAAACCACAAAAATCTGCAAAATGTTTGAAACCACCACCCTATTTAACAAACTTAGCTGATGAAGCAGAATCTTTGGATAAGAATTTACCTTGTTCATACTCCGAATCTGAAGCAGAAAGTGAGGAAAAGGACGAAAAGATATCACTATTGGAGCCTCAGAAATTCCAAACCCCAAAACAAACAAAAAATATTTGTTCAGGATCCATGTGTTCTCCAGATTATAACATGGAAGACGAACATGTGCCTCCAGAGGACTTTGTCTGTCCATTAACAAGTAACCTATTTGATGATCCTGTGACCCTTGAGACAGGACACACATTTGAACGCCATGCTATTGAAGAATGGCTTAAAAGGGGAAACTTAACTTGTCCCATCACTCGCAAGAAGCTGCGAAAGACTCGCTTACCGAAAACAAATCTCGTGCTCAAACAAATAATCTCAAGCTGGAAAGAACAAAATCTCAATTCAGTAGTCGAAATGCCATGTGACAGTCCACATGGAGATACCGAGCTGAAAGTGGAGTGTTCAACTTCTCCTAACAGTGTCATATCAGAGGCGACGCTTGACGGAATGATGAGCGAGTTGCGCAATGCAATCAACAAACTGTATATGTCAGAGGTGCTTGCGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGATTTGGAGAGAACTGAACCTAATAGTTGTTGATATCCATAGTATGCTATCAAAACCTGCTATCATCAATGGATTCATGGGGGTGCTTCTTAAGTCTTTTGATCCAAAGGTGCTGCAAACAGCAGTTTTCTTGTTAACTGAGATGGGTTGCGTAGACAGTAATGTAATTCAGACGCTTAGCCATGTTGACACTGATGTAGAATGGATCAAGACTCTTTTCAAGAAAGGTGTAAAAGAGGCTGTGGTGTTAATGTATCTTCTGAAACCTTCCACTATCATTCTTTCAGATATGGCAACAGTGGAGGCTCTCATTGCAGTTGTAAATATGAAAGAGGAAGAATTTCTAGAGATGTGTTTGAGTCCCAAAACGGCTGCAGTGCTTTTACTTGCGCAGGTTGTTGGAAGCAGTGAAGAGAGCATTGCATCTTCAGTTGCACAGGCTGTGTTATCCGAAAGAGAAATTGAAGCTATAGTTGGCAGTTTGGGAGCAGAATGGGCAGAGGAGAGGGTTGCTGCGGTTGAGATCTTGTTAAAATGCATGCAAGAAGATGGTACTTGCAGGAATATCATTGCTGATAAGGCACAATTATCTACCTTTTTGGAAAGCCTTGTAGGTGCAACTGAGGGAGAACTTTTCAAGATAGTTAAATTTTTATCTGAGTTGGTAAAACTGAATAGGAGAACATTCAATGAACAAATCCTTCACATTATAAAGGAAGAAGGTCCTTTAAGCACAATGCACACTCTCCTCATTTCTCTGCAGACAGCTCATCAATTCCATTTTCCAGTGTTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTGGAGCAAACAAAGATGAGCATATACTCTGAGGAGGCAATAGATACTCTTATCTCATGCTTGAGAAAGACTGATTACCCTGCTGTCCAATTAGAAGCTGCCAAGATAATTGCGTCACTGCAAGGGAGATTCAACTATGCCGGAAAGTCTCTTAGCCGAGAAGTCCTTCTTGAACGTGCTGGTCTTGACAGAAGCTACAACAATTTTCTACAGATGGACCAGATCAGCAACTTCAACGAAGGAATTGAAGCATCTATGAAAGAAGAGAATGCAGCTGAGGACTGGGAAAGAAAAGCTGCATCAGTTCTAGTTAGCCATGACTGTGGTTTACTTTTTGAGGCTTTAGCAGATGGCTTGAAGAGCCAAAATGAAGAACTACGCTCTGCATGCTTTATATCAGCTACATGGCTCATATATATGATCACCATTCTACCAGATACTGGAATACAAGGGGCAGCACGAGTCTTCTTTCTCAAACACTTCATATTCATATTGAAATCTGCCGAGGACACTGAAGACAGAATCCTTGCCATGCTTGCTCTTAAGAGCTTTCTTCATTTTGATGATGGCTTACGTGATCTTACTTCCTATGCGAAGGATATCCTCAAAGCACTGAGAGAATTAGAGGGGTTCTCTCCCATGGCATCAGAAATTATGAAGGTTTTGGTTGAAGAACCTGAATCTAAAGCAGACATCTGGATTCATAAAGAGGTAACTAAAATAGATTGCAGTGGGAATGGAGAAGTTCTTTCTATCATTTGCTTTGAAGATAAAATCTTTTCAGGGCATTCAGATGGAACTATTAAGGTGTGGAAAGTAAAGGAAAGCATAGTCGATCTCTTGCAAGAGATTAAAAGGCATACGAAGGATGTTACAAGCTTGGCAATTTCGGAATCTGGCGACAGATTATACAGCGGTTCACTTGATAGAACTGTAAAGGTCTGGTCCATTGAAATGGCTGCAATACATCATGTACAAGAACATGATATGAAGGACCACATTCATAATTTAGTTGTGACCAATAGTATGTGTTGCTTCAGTCCTCATGGAAGTGGCATCAAGGTTAAGTCATGGAATGGAGAATCTAAGTTGTTAAATTCTAATAAACATGCAAAGTGCTTGGCTCTTGTTCAGGGGAAATTATACTGTGGATGCCATGATAGCAGCATTCAGGAGATCGATTTAGCCACAGGAAAACTCATCAGCATTCAAAGTGGTTCCAAAAAGTTACTTGGGAAAGCAAATCCTATTCATGCACTGAAACTTCATGGTGAATTCATATACGCTACTAGCTCTTCCTTTGATGGATCTGTCATAAAGATATGGAACACATCCAATAATAATCGTATACATATGGTTGGATCATTGCAAACTTCATTGGAAGTGCGAGCTATGGCAGTAAGCTCAGAACTAATTTATTTGGGGTGTAAGGGAGGAGCTGTGGAAATCTGGGATAGAAAGAAATACAATAGAATTAACACATTGCACACCGGATCCAATTATAGGGTTGTTTGCATGGCTTTGAATAGCACTGAGGATATTTTGGTAATTGGAACCTCGGACGGTCAAATTCAGGCATGGGGTGTCAAGTAA 4149 0.4408 MTTAVTAAEILRHTTAFLSDVISNRDLRHRLISILHRDTTTAAISDESAAKLAADTLETAIMLSNFASRSCSLSLAEKLLLPLSDHPLPFFLLSLVHTLHNRHLDAAVSLLRFFRSNPSLARSEIAPVLYDRLFSLQLLSVFRWLLERRAQILSSSSVSEDATHSLSKVSEEQASKLRELEREYEEILDENCRAVAARFEEVLASENASISPPLLARKSSGEAGGAENNVEVEEDEEEQLVMEETEMIALKSGHYDNPIWSEREEASIEFLSSGSCSNSSYAPFYPRRVSPTILKPQNSSQNLASLADETESSLVDKSLTSSSSESEAEREITSTSCSKRTPNLVRTGNKSLSTPKILKPQKSAKCLKPPPYLTNLADEAESLDKNLPCSYSESEAESEEKDEKISLLEPQKFQTPKQTKNICSGSMCSPDYNMEDEHVPPEDFVCPLTSNLFDDPVTLETGHTFERHAIEEWLKRGNLTCPITRKKLRKTRLPKTNLVLKQIISSWKEQNLNSVVEMPCDSPHGDTELKVECSTSPNSVISEATLDGMMSELRNAINKLYMSEVLAESEMAVLQIEKIWRELNLIVVDIHSMLSKPAIINGFMGVLLKSFDPKVLQTAVFLLTEMGCVDSNVIQTLSHVDTDVEWIKTLFKKGVKEAVVLMYLLKPSTIILSDMATVEALIAVVNMKEEEFLEMCLSPKTAAVLLLAQVVGSSEESIASSVAQAVLSEREIEAIVGSLGAEWAEERVAAVEILLKCMQEDGTCRNIIADKAQLSTFLESLVGATEGELFKIVKFLSELVKLNRRTFNEQILHIIKEEGPLSTMHTLLISLQTAHQFHFPVLAGLLLQLDLLVEQTKMSIYSEEAIDTLISCLRKTDYPAVQLEAAKIIASLQGRFNYAGKSLSREVLLERAGLDRSYNNFLQMDQISNFNEGIEASMKEENAAEDWERKAASVLVSHDCGLLFEALADGLKSQNEELRSACFISATWLIYMITILPDTGIQGAARVFFLKHFIFILKSAEDTEDRILAMLALKSFLHFDDGLRDLTSYAKDILKALRELEGFSPMASEIMKVLVEEPESKADIWIHKEVTKIDCSGNGEVLSIICFEDKIFSGHSDGTIKVWKVKESIVDLLQEIKRHTKDVTSLAISESGDRLYSGSLDRTVKVWSIEMAAIHHVQEHDMKDHIHNLVVTNSMCCFSPHGSGIKVKSWNGESKLLNSNKHAKCLALVQGKLYCGCHDSSIQEIDLATGKLISIQSGSKKLLGKANPIHALKLHGEFIYATSSSFDGSVIKIWNTSNNNRIHMVGSLQTSLEVRAMAVSSELIYLGCKGGAVEIWDRKKYNRINTLHTGSNYRVVCMALNSTEDILVIGTSDGQIQAWGVK 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03194 1382 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1381 - -
Arst5g03194 1382 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1381 - -
Arst5g03194 1382 Gene3D - 1080 1229 IPR015943 GO:0005515
Arst5g03194 1382 Gene3D - 1230 1382 IPR015943 GO:0005515
Arst5g03194 1382 Pfam U-box domain 441 511 IPR003613 GO:0004842|GO:0016567
Arst5g03194 1382 Coils Coil 170 190 - -
Arst5g03194 1382 SUPERFAMILY ARM repeat 718 1058 IPR016024 -
Arst5g03194 1382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1136 1170 - -
Arst5g03194 1382 ProSiteProfiles Trp-Asp (WD) repeats profile. 1348 1382 IPR001680 GO:0005515
Arst5g03194 1382 ProSiteProfiles U-box domain profile. 439 514 IPR003613 GO:0004842|GO:0016567
Arst5g03194 1382 SMART WD40_4 1340 1380 IPR001680 GO:0005515
Arst5g03194 1382 SMART WD40_4 1086 1124 IPR001680 GO:0005515
Arst5g03194 1382 SMART WD40_4 1301 1337 IPR001680 GO:0005515
Arst5g03194 1382 SMART WD40_4 1249 1295 IPR001680 GO:0005515
Arst5g03194 1382 SMART WD40_4 1129 1168 IPR001680 GO:0005515
Arst5g03194 1382 SMART Ubox_2 443 507 IPR003613 GO:0004842|GO:0016567
Arst5g03194 1382 ProSiteProfiles Trp-Asp (WD) repeats profile. 1136 1170 IPR001680 GO:0005515
Arst5g03194 1382 SUPERFAMILY RING/U-box 438 512 - -
Arst5g03194 1382 MobiDBLite consensus disorder prediction 292 355 - -
Arst5g03194 1382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 518 IPR013083 -
Arst5g03194 1382 MobiDBLite consensus disorder prediction 214 239 - -
Arst5g03194 1382 CDD RING-Ubox_PUB 441 493 IPR045210 -
Arst5g03194 1382 Pfam WD domain, G-beta repeat 1087 1124 IPR001680 GO:0005515
Arst5g03194 1382 Pfam WD domain, G-beta repeat 1133 1168 IPR001680 GO:0005515
Arst5g03194 1382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1348 1382 - -
Arst5g03194 1382 SUPERFAMILY WD40 repeat-like 1091 1381 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03194 Arst-Chr5 89362444 89369644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03194 429 632 U-box Gene Family AT1G71020 29.902 1.11e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03194 - - lang:109342256 1530.38