Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03190 ATGTCTGTGCCATTAGAGCAAGACTATGTAGTAGGCTTACCTGAGCTTCCTTCAATGGAAACCACAGAAAAAACCCCTCAAAAAACAACAAAAACCAGTGGTAGCTTCTTGAACCTTAAGGCCACTGAACTTAGACTTGGCTTGCCAGGTTCAGAGTCACCAGAAAAAGATGAAGATGATGGTGTGTGTTCTGGGAAGTTGAATCTCTCTGGAAATGGTGGATCAGAAATGGGTATTGGTAAAGATGGTAACTTGTTCACTCCTCCAAGAGAAAGAGAACAAGCATCTGTTATGAAAGAGTCAACAAAGCCACTCAGTCAGAACCACAAGCCTCAGATATCTTCTGCTACTGCTGCAAAAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTTCTTTGATGAATGATGAAGTTGATGCATCAGAAGCCAACTCTGGTAATTGCCTTTATGTCAAAGTCAGCAAGGATGGTGCTCCATTCTTGAGGAAAGTTGATCTCAAAAACTTTGATTCTTATAGGGATCTCTCTTCAGCCCTCAACAACATGTTTACTTGCTTTACAATCAGTCAATGTGGTACTCATGGAGTTTCTAGTAGAGACAAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAATTCTTGCAAGAGACTGAGGATAATGAAGAGTTCGGAAGCTATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACAAGCTAGCACAATATATATAA 849 0.4158 MSVPLEQDYVVGLPELPSMETTEKTPQKTTKTSGSFLNLKATELRLGLPGSESPEKDEDDGVCSGKLNLSGNGGSEMGIGKDGNLFTPPREREQASVMKESTKPLSQNHKPQISSATAAKEQVVGWPPIRSFRKNSMATSLMNDEVDASEANSGNCLYVKVSKDGAPFLRKVDLKNFDSYRDLSSALNNMFTCFTISQCGTHGVSSRDKLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCKSRNKLAQYI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03190 282 MobiDBLite consensus disorder prediction 99 120 - -
Arst5g03190 282 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 263 IPR003311 GO:0005634|GO:0006355
Arst5g03190 282 MobiDBLite consensus disorder prediction 99 119 - -
Arst5g03190 282 Gene3D - 150 270 - -
Arst5g03190 282 MobiDBLite consensus disorder prediction 20 39 - -
Arst5g03190 282 Pfam AUX/IAA family 42 267 IPR033389 -
Arst5g03190 282 ProSiteProfiles PB1 domain profile. 156 258 IPR000270 GO:0005515
Arst5g03190 282 FunFam Auxin-responsive protein 151 268 - -
Arst5g03190 282 SUPERFAMILY CAD & PB1 domains 150 257 - -
Arst5g03190 282 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03190 Arst-Chr5 89268398 89273123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03190 158 274 B3 DNA Binding Superfamily AT1G30330 29.915 6.05e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Arst5g03190 AUX_IAA 3.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03190 K14484 - gmx:100803754 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03190 5 89268398 89273123 Arst5g03190 5 89268398 89273123 ECH
Arst5g03190 5 89268398 89273123 Arst5g03190 5 89268398 89273123 PCT