Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03179 ATGAAGAATATTAATAATAATGATAATAATAAACATGGTTCTATTATTACCCTCTTATTATTAGTTCTAATTTCAATGTTAATCCAGCATGTTAGAGCAATAAATCCTTCTTCTTCATCATCAGGAGATGCTGTGTCCAATTTCCAACCAAGCCTTGTTGTTGTGATAGGAATCCTTGGCCTAATGTTTTCACTAACATTTGTTCTTCTTGTTTTTGCCAAATTTTGCCAAAGAGGAGCACTTGTCCCTCTTCTCCAAACAGAGAATCAAGAAAACCAGTTGTTATCAAGGTCTAGAAGATTCTCAGGAATTGATAAGAATGTTATTGAGTCATTACCCTTCTTCAGATTCTCATCCCTAAAAGGATCAAAGGAAGGCTTGGAGTGTTCTGTTTGCTTATCGAAATTCGAAGATGTCGAAATCCTTAGGCTCTTGCCAAAATGTAAGCATGCTTTTCACATTGATTGCATTGATCACTGGCTTGAGAAACACGCAAGCTGCCCTCTTTGCAGGCACAAGGTGAATCCGGCCGACGAGTCGATTTTCGCCTATTCAAACAGCTTAAGGAGGCTTGTTATCAATAATTCGGCCGCGGACGAAGACTCCAACATGGAGCTCTTCGTCCAAAGAGAGGAGGAAGAAGAAGGAGGAGAAGCAGAGCGACGCGGCTCAACAAGATTTAGTATTGGAAGTATTAGTCTCCGGAGATTATTTTCGAAGGATGTTAAGGAAGAAGAGTTGCCTATACAGAACAGAACCGATTGCGAAAACAAGGAGTACCATAAACACAAACACCGGATTACTGTCTCCGATGTTGTGTTTAAGAATCGGTGGAGCAATGTTAGCTCTTCAGACATAATGTTCTTGAACTCCGAGATGCTTAACGAGGTTTCGAGTTGCCGGTTCGACAACCAGAATGCAAATGATCAAGGAATCTTGAACCTCAAGGAAGAGATGGAAAGGAAGATTTCATTTGAGAGCAAAATTGGTGCAATAAACAAGATTAATAACTCAAATTCAGATAAGGCTCCTTCTTCTTCTTCTTCTTCTACTTCTATAAAGCATTTGATGAATGAACATAGTGAGAAAAGGTCAATGTCAGAAATCATAGGAGTTTCAAGATTTGGTGAAATAGGAATGATGATGAAACAACAAAACAGAGCATTTAATAAGGATTCTTCTTCTTTGATTGATGAGAACAATAACATGAAAGAAGAAAGGATGAGGCAGCTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAACAAGGTCTCATCATAAGAATAATCAAAAGACATTAGATGTATAG 1326 0.3824 MKNINNNDNNKHGSIITLLLLVLISMLIQHVRAINPSSSSSGDAVSNFQPSLVVVIGILGLMFSLTFVLLVFAKFCQRGALVPLLQTENQENQLLSRSRRFSGIDKNVIESLPFFRFSSLKGSKEGLECSVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHASCPLCRHKVNPADESIFAYSNSLRRLVINNSAADEDSNMELFVQREEEEEGGEAERRGSTRFSIGSISLRRLFSKDVKEEELPIQNRTDCENKEYHKHKHRITVSDVVFKNRWSNVSSSDIMFLNSEMLNEVSSCRFDNQNANDQGILNLKEEMERKISFESKIGAINKINNSNSDKAPSSSSSSTSIKHLMNEHSEKRSMSEIIGVSRFGEIGMMMKQQNRAFNKDSSSLIDENNNMKEERMRQLWFPIARRTVQWFVNRETRSHHKNNQKTLDV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03179 441 CDD RING-H2_EL5-like 128 171 - -
Arst5g03179 441 MobiDBLite consensus disorder prediction 335 355 - -
Arst5g03179 441 Pfam Ring finger domain 128 171 IPR001841 -
Arst5g03179 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 428 - -
Arst5g03179 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 180 IPR013083 -
Arst5g03179 441 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Arst5g03179 441 SMART ring_2 129 170 IPR001841 -
Arst5g03179 441 FunFam RING-H2 finger protein ATL43 104 178 - -
Arst5g03179 441 SUPERFAMILY RING/U-box 108 177 - -
Arst5g03179 441 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03179 Arst-Chr5 89035958 89037473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03179 19 441 C3H Transcription Factor Family AT4G28890 46.606 1.26e-108 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03179 K10664 - gmx:100803207 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03179 5 89035958 89037473 Arst5g03179 5 89035958 89037473 ECH