Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g03087 ATGAATAATAATAAGATAAGCAACATGAGCTCCGTGAGTAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGAGGATCCAAGCAGTGCCCCGGTTGCGGCCACAAGTTTGAATCCAAACCGGATTGGCTAGGTTTACCAGCAGGAGTGAAGTTTGATCCAACAGATCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGACGAATTCATTCCCACCATTGAAGGTGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTAAGTAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACAGGAACAAGAAAGAGGAGAAAGATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACGAGGTGGCATAAGACCGGTAAAACAAGACCGGTCATGGTTAACGGAAAACAGAAGGGTTGCAAGAAGATTTTGGTACTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAGAAGACGAATTGGGTCATGCATCAATACCATTTGGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTTGTGTCCAAGATATTCTACCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCACCATCGCTACGGCCGAAGGGAGTGGAGAGCCACTACAAAATAGTAGAAGAGATAGCGGAAGTGGAAGTTGTTCTTCTAAGGAAATTAACATAGGTCATAAGGATGAGATGTCTGCTGTGGTTGGAGTTACTAATACTCCAATCACAGGCTTCGCTCATCCCTTGGACATTCATCATCATCTCAAATCGGATCATTTTAGCTTCATCCCATTTAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGATGAAGTAGTACATGAACATGTAAATCATCATCATCAACAACAACAACAACATCATCATCATCATCAAATTNNNNNNNNNNNNNNACATCCAATCTCTACCTTGATATCTCCACCACCACTTCACCACACATCCATCATCTTAGACGATAATTCCTACCAAGTCTCCAGAATAATGCTCCAAAATGAACATTTCCAGCAACAACAACAACAACATCAACAACATCATCATAAAATTGGAGCAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1359 0.4319 MNNNKISNMSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTTIATAEGSGEPLQNSRRDSGSGSCSSKEINIGHKDEMSAVVGVTNTPITGFAHPLDIHHHLKSDHFSFIPFRKSFDEVGIGEASTAREVQASGSCDEVVHEHVNHHHQQQQQHHHHHQIXXXXXHPISTLISPPPLHHTSIILDDNSYQVSRIMLQNEHFQQQQQQHQQHHHKIGARSASGLEELIMGCTSSDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g03087 452 Gene3D NAC domain 59 215 IPR036093 GO:0003677|GO:0006355
Arst5g03087 452 MobiDBLite consensus disorder prediction 223 257 - -
Arst5g03087 452 SUPERFAMILY NAC domain 45 211 IPR036093 GO:0003677|GO:0006355
Arst5g03087 452 FunFam NAC domain-containing protein 73 59 215 - -
Arst5g03087 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 343 IPR044799 GO:0003700
Arst5g03087 452 Pfam No apical meristem (NAM) protein 51 192 IPR003441 GO:0003677|GO:0006355
Arst5g03087 452 ProSiteProfiles NAC domain profile. 50 211 IPR003441 GO:0003677|GO:0006355
Arst5g03087 452 MobiDBLite consensus disorder prediction 223 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g03087 Arst-Chr5 87565273 87570693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g03087 13 449 NAC Transcription Factor Family AT5G56620 51.739 1.03e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst5g03087 NAM 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g03087 - - gmx:100795246 717.227