Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02966 ATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACTTTACCAAAACCATGGCGCGGTCTTGTGGATGGAAAGACTGGGTATCTTTATTTTTGGAATCCTGAAACTAATGTTACCCAATATGAGCGGCCTTCGAGCTCATCTGCCCCACCTAAGTATTCTTCTTCGGTGTCTAGTTCCTCTGTCCAGGTTCAACAGTCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGAGTGATAGGTATGATAGAAACAGTGGAGGTGGGTCAAACAATGAAGGTGGATTGCGCAACTACCAGGAGTCGAAAGGTGGAAATTTTAGCTCTCATAATACTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTATCAAAGGTCAAGGAGCACCAGATACTGGAGTTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACAGTTACTGGTGATGATGTTCCTCCACCACTTACGTCATTCGGTTCAAGTGGCCTTCCCTCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCAATTGCTAAAACAGGTTCAGGGAAGACTCTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGATCCAAGAATGGGCCCCACAGCATTGGTACTATCACCAACAAGGGAACTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCGTCAAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGGGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATTCTTGAGATGAGGAGAATTACTCTTAACCAGATTTCTTATCTAGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAGCCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGACCTGCTGGTCAATCCCGTTCAGGTGAACATCGGGAATGTAGATGAGCTTGTTGCTAACAAATCTATTACTCAGCATGTTGAAGTATTGACCTACATGGAGAAACAGAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTGCACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGGACTGGGAGGTCTCCTGTCCTTGTTGCTACGGATGTTGCAGCTCGAGGATTGGACATTAAAGACATCAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGAGCTGGGGCCACTGGTTTGGCATACACTTTCTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTTCCTCCTGAACTTCGGGATATGTCAGGACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGCCGCGGGGGACGCGGTGACTCTGGATTTGGTGGAAGGAATAATGATTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATACAGTGGAAGGGGTAGTAGTGATGCTGGATATGGTAGCAGAGTTGGCGACTCTAGTTATGGAGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGTCGTGGGTCAGACTATGATTCACAGAGGAATGATCGGGCTCGGAGTCCTGACAGGGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGCCGTAGCCGTAGCCCTGTCAGGGTCCCACCAAATTCCAATGTCAGCTTTCACAAAGCAATGATGGAACGTGGTGGAGGTGATAGTGATCGCAAGGGTTTTAATCGGGACCGAAGCCGCAGTCCTGCCCCCTACAGCAAGGACCGGGCTCCCACTGGTCGCGAACGTTCCCCCCCTTACAGTTTTCATCGCTCTGTTATGGGGCAAGGTCGATCATCCTCCCCATATCGACAGCAGCATGCAGAGGAAAAAGCATTAAGACGCAGTCCTAATCGAAGTTCACCATCCTCTCCTGGTGGTGGTAGATCGAACAATGGTACTCAAAAGGAGTGGGGAGGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGCATGATACCTGATGAAGAAGGCATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAG 2433 0.4801 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSAPPKYSSSVSSSSVQVQQSSQGQQRGRSPELSDRYDRNSGGGSNNEGGLRNYQESKGGNFSSHNTPNGMHSAGNVSSSIKGQGAPDTGVGLSPEAYRRRHEITVTGDDVPPPLTSFGSSGLPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGEQDAKHATDLIKVLEGANQRVPPELRDMSGRGGGMNRSRRWGSSGSGRGGRGDSGFGGRNNDSGYGGRGSDSGYSGRGSSDAGYGSRVGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRVPPNSNVSFHKAMMERGGGDSDRKGFNRDRSRSPAPYSKDRAPTGRERSPPYSFHRSVMGQGRSSSPYRQQHAEEKALRRSPNRSSPSSPGGGRSNNGTQKEWGGSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02966 810 FunFam ATP-dependent RNA helicase RhlB 378 550 - -
Arst5g02966 810 SMART helicmild6 428 508 IPR001650 -
Arst5g02966 810 MobiDBLite consensus disorder prediction 47 143 - -
Arst5g02966 810 MobiDBLite consensus disorder prediction 681 712 - -
Arst5g02966 810 SMART ww_5 20 53 IPR001202 GO:0005515
Arst5g02966 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 524 IPR027417 -
Arst5g02966 810 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 320 328 IPR000629 -
Arst5g02966 810 Gene3D - 379 549 IPR027417 -
Arst5g02966 810 MobiDBLite consensus disorder prediction 47 83 - -
Arst5g02966 810 Pfam DEAD/DEAH box helicase 193 363 IPR011545 GO:0003676|GO:0005524
Arst5g02966 810 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Arst5g02966 810 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 169 197 IPR014014 GO:0003724
Arst5g02966 810 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 547 - -
Arst5g02966 810 MobiDBLite consensus disorder prediction 539 810 - -
Arst5g02966 810 MobiDBLite consensus disorder prediction 92 138 - -
Arst5g02966 810 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 547 IPR001650 -
Arst5g02966 810 CDD WW 22 51 IPR001202 GO:0005515
Arst5g02966 810 Gene3D - 17 70 - -
Arst5g02966 810 MobiDBLite consensus disorder prediction 1 27 - -
Arst5g02966 810 Gene3D - 147 378 IPR027417 -
Arst5g02966 810 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 374 IPR014001 -
Arst5g02966 810 MobiDBLite consensus disorder prediction 583 597 - -
Arst5g02966 810 CDD SF2_C_DEAD 388 517 - -
Arst5g02966 810 Pfam Helicase conserved C-terminal domain 400 508 IPR001650 -
Arst5g02966 810 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Arst5g02966 810 MobiDBLite consensus disorder prediction 629 662 - -
Arst5g02966 810 FunFam probable ATP-dependent RNA helicase DDX17 146 377 - -
Arst5g02966 810 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Arst5g02966 810 MobiDBLite consensus disorder prediction 748 769 - -
Arst5g02966 810 SMART ultradead3 188 391 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02966 Arst-Chr5 85434874 85440304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02966 167 546 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 7.67e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02966 K12823 - gmx:100786511 1058.51