Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02965 ATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACTTTACCAAAACCATGGCGCGGTCTTGTGGATGGAAAGACTGGTTCCTCTGTCCAGGTTCAACAGTCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGAGTGATAGGTATGATAGAAACAGTGGAGGTGGGTCAAACAATGAAGGTGGATTGCGCAACTACCAGGAGTCGAAAGGTGGAAATTTTAGCTCTCATAATACTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTATCAAAGGTCAAGGAGCACCAGATACTGGAGTTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACAGTTACTGGTGATGATGTTCCTCCACCACTTACGTCATTCGGTTCAAGTGGCCTTCCCTCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCAATTGCTAAAACAGGTTCAGGGAAGACTCTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGATCCAAGAATGGGCCCCACAGCATTGGTACTATCACCAACAAGGGAACTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCGTCAAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGGGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATTCTTGAGATGAGGAGAATTACTCTTAACCAGATTTCTTATCTAGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAGCCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGACCTGCTGGTCAATCCCGTTCAGGTGAACATCGGGAATGTAGATGAGCTTGTTGCTAACAAATCTATTACTCAGCATGTTGAAGTATTGACCTACATGGAGAAACAGAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTGCACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGGACTGGGAGGTCTCCTGTCCTTGTTGCTACGGATGTTGCAGCTCGAGGATTGGACATTAAAGACATCAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGAGCTGGGGCCACTGGTTTGGCATACACTTTCTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTTCCTCCTGAACTTCGGGATATGTCAGGACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGCCGCGGGGGACGCGGTGACTCTGGATTTGGTGGAAGGAATAATGATTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATACAGTGGAAGGGGTAGTAGTGATGCTGGATATGGTAGCAGAGTTGGCGACTCTAGTTATGGAGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGTCGTGGGTCAGACTATGATTCACAGAGGAATGATCGGGCTCGGAGTCCTGACAGGGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGCCGTAGCCGTAGCCCTGTCAGGGTCCCACCAAATTCCAATGTCAGCTTTCACAAAGCAATGATGGAACGTGGTGGAGGTGATAGTGATCGCAAGGGTTTTAATCGGGACCGAAGCCGCAGTCCTGCCCCCTACAGCAAGGACCGGGCTCCCACTGGTCGCGAACGTTCCCCCCCTTACAGTTTTCATCGCTCTGTTATGGGGCAAGGTCGATCATCCTCCCCATATCGACAGCAGCATGCAGAGGAAAAAGCATTAAGACGCAGTCCTAATCGAAGTTCACCATCCTCTCCTGGTGGTGGTAGATCGAACAATGGTACTCAAAAGGAGTGGGGAGGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGCATGATACCTGATGAAGAAGGCATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAG 2337 0.4822 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGSSVQVQQSSQGQQRGRSPELSDRYDRNSGGGSNNEGGLRNYQESKGGNFSSHNTPNGMHSAGNVSSSIKGQGAPDTGVGLSPEAYRRRHEITVTGDDVPPPLTSFGSSGLPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGEQDAKHATDLIKVLEGANQRVPPELRDMSGRGGGMNRSRRWGSSGSGRGGRGDSGFGGRNNDSGYGGRGSDSGYSGRGSSDAGYGSRVGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRVPPNSNVSFHKAMMERGGGDSDRKGFNRDRSRSPAPYSKDRAPTGRERSPPYSFHRSVMGQGRSSSPYRQQHAEEKALRRSPNRSSPSSPGGGRSNNGTQKEWGGSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02965 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 515 IPR001650 -
Arst5g02965 778 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 98 515 - -
Arst5g02965 778 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Arst5g02965 778 MobiDBLite consensus disorder prediction 33 51 - -
Arst5g02965 778 Pfam Helicase conserved C-terminal domain 368 476 IPR001650 -
Arst5g02965 778 Gene3D - 115 346 IPR027417 -
Arst5g02965 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 342 IPR014001 -
Arst5g02965 778 MobiDBLite consensus disorder prediction 551 565 - -
Arst5g02965 778 Pfam DEAD/DEAH box helicase 161 331 IPR011545 GO:0003676|GO:0005524
Arst5g02965 778 CDD SF2_C_DEAD 356 485 - -
Arst5g02965 778 Gene3D - 347 517 IPR027417 -
Arst5g02965 778 MobiDBLite consensus disorder prediction 1 115 - -
Arst5g02965 778 SMART ultradead3 156 359 IPR014001 -
Arst5g02965 778 SMART helicmild6 396 476 IPR001650 -
Arst5g02965 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 492 IPR027417 -
Arst5g02965 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Arst5g02965 778 MobiDBLite consensus disorder prediction 597 630 - -
Arst5g02965 778 FunFam ATP-dependent RNA helicase RhlB 346 518 - -
Arst5g02965 778 MobiDBLite consensus disorder prediction 649 680 - -
Arst5g02965 778 FunFam probable ATP-dependent RNA helicase DDX17 114 345 - -
Arst5g02965 778 MobiDBLite consensus disorder prediction 60 106 - -
Arst5g02965 778 MobiDBLite consensus disorder prediction 716 737 - -
Arst5g02965 778 MobiDBLite consensus disorder prediction 507 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02965 Arst-Chr5 85434874 85440304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02965 135 514 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 4.76e-65 221