Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02935 ATGGACGTTACAAAACGTAGCTCCGTCTTCACCCAAATCGCTTCAAGGGAGCTCAATTCCTTCCGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGTGCTGTTGGAGTTCACCACAGCGAAGATGGTACCATTCCCATGTCCCTCTCTTTCTGTAAGACTCCCAAGTATTCACACATTCTGGCTTTATCTGATGAAGATGGATACCTAACCTTATTTGATTCGCGTAAAAAATTCTCCGTATTATCCTCGTTTGAAGAAAATGCAGAGAAAGCGAAGATCTGTGAGTGGGTTTCTCATCTTAATGCCGTGTTTGATATCTGTTGGATTAAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTACAAGAAAAGAAATGTATTGGAGTGTTGACGGGGCACACAGGGAGTGTGAAGTCTATGTGTGCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAGACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGTGTCAGAAAGGGCAAGGCCAAGTCCATGAGCATTACATCTGTTCTTTGTCTTAAGGACCAGGTTTCCATAGCCACTGCAGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAAAGTTTTGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGTTGGTTTAAAATGTACTGCAAAATCCCAAGATGAAAGTGGTCTTTTTCTTTCAGCATCCTGCATGGATAACTGCATTTATCTGTATAGCATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGTTGTCCCATAGAATCATTTTTTGTCAAGGCTGCCATTAGCCCAGATGCGTCTCAAATAGTCAGCGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCCCAAGCGACGCCTGTTATTTTGAAAAGTCATGATGCGGAGGTTACAGCAGTTGACTGGAACCACTCTGAGATTGGTAAATTAGCAACGACATCAGATGATTGCACAGTTCGGATTTGGAACCAAACCAATTATATCTGCGACAAAAAGACTTCATGTTCCATCCGCAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATTCTACTGAACAATGAAGAAAAGTATCTCAAGTCAATAGACAATGAATCATTAGATCCCCCAATTAAGTTAGCCACTCCAATCACTCCACCTAAAATTCTTGCACCTGAAGGGTGGCACAAGAACAAGCTGCCCTCAGGATTCAATCAAACTTCATCATCTGAAAAGACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCGGGACTACTTTTTGGCATCTTCATGA 1512 0.4279 MDVTKRSSVFTQIASRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEDGTIPMSLSFCKTPKYSHILALSDEDGYLTLFDSRKKFSVLSSFEENAEKAKICEWVSHLNAVFDICWIKEDTQILTASGDQTMKVWDVQEKKCIGVLTGHTGSVKSMCAHPNNADIIVSGSRDGSFCLWDLRCKSATRGRHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKVGLKCTAKSQDESGLFLSASCMDNCIYLYSILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQATPVILKSHDAEVTAVDWNHSEIGKLATTSDDCTVRIWNQTNYICDKKTSCSIRRRVMAMPCTESKILLNNEEKYLKSIDNESLDPPIKLATPITPPKILAPEGWHKNKLPSGFNQTSSSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02935 503 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Arst5g02935 503 Pfam WD domain, G-beta repeat 355 389 IPR001680 GO:0005515
Arst5g02935 503 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Arst5g02935 503 Gene3D - 186 422 IPR015943 GO:0005515
Arst5g02935 503 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 501 - -
Arst5g02935 503 SUPERFAMILY WD40 repeat-like 64 400 IPR036322 GO:0005515
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Arst5g02935 503 SMART WD40_4 139 179 IPR001680 GO:0005515
Arst5g02935 503 SMART WD40_4 349 389 IPR001680 GO:0005515
Arst5g02935 503 SMART WD40_4 304 345 IPR001680 GO:0005515
Arst5g02935 503 SMART WD40_4 97 136 IPR001680 GO:0005515
Arst5g02935 503 SMART WD40_4 209 249 IPR001680 GO:0005515
Arst5g02935 503 Gene3D - 40 185 IPR015943 GO:0005515
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 389 IPR001680 GO:0005515
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Arst5g02935 503 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Arst5g02935 503 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Arst5g02935 503 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Arst5g02935 503 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Arst5g02935 503 MobiDBLite consensus disorder prediction 451 490 - -
Arst5g02935 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 389 - -
Arst5g02935 503 MobiDBLite consensus disorder prediction 460 490 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02935 107 344 U-box Gene Family AT1G04510 24.615 1.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02935 K11790 - gmx:100819114 692.575