Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02930 ATGAAGAAGACGAAGAACACGAGCATCACCACAATTCTCAACCTCTTTCTGGAGATGGTGCTAGCCCTGGCCCAATTTGTGAAGCACTTTGGTAAATATGGTGAGATTACGGACTCTGTGATCATGAAGGACCGCAAAACCGGCCAGCCTCGTGGATTCGGGTTTATAACTTACGCTGATCCCTCTGTGGTTGATAAAGTCATTGAGGACAATCATGTTATCAATGGCAAACAGGTTGAGATTAAGCGCACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAACTGTGACTGAAGATGAGTTTAGAGACTTTTTTACGCGCTATGGAGAAGTCAAGGATCACCAAATAATGAGGGACCACTCCACCAATCGTTCTCGAGGATTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGATGATCTGCTGTCCATGGGGAACAGGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCACCTACGTCATCCAAGCGTTATAATGACTCAAGGTCTTCATATGGTGGTGGATACGGAGATGCTTATGATGGATTTGGTGGCAGCTTTGGTGTTGGTGGTTATCGGTCAGGTGGCATGTACGGTGGTAGGAGTGGTGCTTATGGTGGCTATGGAAGTGAATTCAGCGGGTATGGAGGATATGCCGGTGCAATGGGGCCCTACAGAGGAGATCCTTCCTTGGGATATGCTGGTCGTTACGGTGGTGGAGGCTTTAGCCGAGGCTATGATCTTGGCGGGTATGGTGGAGCTAGTGAGAATTATGGGGCATATGGCGGTGCTGCTGCTGGAGGTGGTTCTTCTGCTGGTGGTGCCTATCAAACTGGCTATGGTGCTGGACTAGGTGGCGGATATGGAGGGGCTAGCGGAGGCTCCTTTTATGGGAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGGTAG 1014 0.4862 MKKTKNTSITTILNLFLEMVLALAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNRIEFAGAQVEIKKAEPKKPNPPPTSSKRYNDSRSSYGGGYGDAYDGFGGSFGVGGYRSGGMYGGRSGAYGGYGSEFSGYGGYAGAMGPYRGDPSLGYAGRYGGGGFSRGYDLGGYGGASENYGAYGGAAAGGGSSAGGAYQTGYGAGLGGGYGGASGGSFYGSRGGYGAGRYHPYGR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02930 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 86 IPR000504 GO:0003723
Arst5g02930 337 SUPERFAMILY RNA-binding domain, RBD 96 206 IPR035979 GO:0003676
Arst5g02930 337 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 337 - -
Arst5g02930 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Arst5g02930 337 SUPERFAMILY RNA-binding domain, RBD 27 88 IPR035979 GO:0003676
Arst5g02930 337 FunFam - 23 84 - -
Arst5g02930 337 MobiDBLite consensus disorder prediction 170 192 - -
Arst5g02930 337 Gene3D - 18 89 IPR012677 -
Arst5g02930 337 FunFam Heterogeneous nuclear ribonucleoprotein 1 89 211 - -
Arst5g02930 337 Gene3D - 98 181 IPR012677 -
Arst5g02930 337 SMART rrm1_1 99 172 IPR000504 GO:0003723
Arst5g02930 337 SMART rrm1_1 14 82 IPR000504 GO:0003723
Arst5g02930 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 79 IPR000504 GO:0003723
Arst5g02930 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02930 Arst-Chr5 85035325 85038680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02930 30 210 Eukaryotic Initiation Factors Gene Family AT4G34110 27.513 4.50e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02930 K12741 K14314 gmx:100813165 354.755