Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02899 ATGGCGAAATCATTCTCTCTAACCCACCACCTTTCCCTCCTACTCCTCCATTCCCATTCTCACCGTCTCTTCATCCCCTCCACGACACTCCTCCCTCTCCCTCTTCATCACCATCACCCCTTCTCTCTCTCCCCATTCCACAAATCCCTCTCTACCAATCCCACCCCATACCCTCTTCAATACGAACTCATCATAAATCGCCCCGTTCAAAAACACCCACCACGTGTTCGACGAAATGCCGCACAAGCTCTCTCTGAACCCCACGAACCAGACGAACCTGAGGAACAAGAACCGACTTCGGAGCTTCGCCTTGACAGCTGGGTCGACCGGAAATTGAGCTTTGACTCCGATTCTGGTCAACCCAGTTCGTCAAATTTGGAACTTGACAAGGCCAAGAGGAAGTACTACAACAAGAGAAGGAAGAGGATGTACGGGTCAGATTCCGAGGAAGAAGAGGCACGGTTACGGAACGAGGAGAAGTTTGTGGAGCTGAAGCCTGAGGTGGTGGAGCTTCCAACTCTGCACCGTAGAGAAGAAGAGTTGTATTTTTATGATGCTTTTGCTTACCCTTGGGAGAAGGAGAAGCACTACAAGATGGTGTATCAGTTGGAGAAGAAGTACTTCCCTAATCAATGCCTTGACAAGGCATTTCTCAAACCGGGAGAGTCGAATTTGAATGCGAATGCAAATGCAAATTTAAATGAAAATGAAAATGTAGATGGTGGTGTGAGGAGCAAGGGGAAGGGTAGGAAGACTGCTGGTGTTAGGGAGGAGAAGAAGGATGATAAGGGTGATAACAAGTTGGTCTTTTTTGATGAGAAGAGGGAAGAGGAAAAGAAGGGTGATGGGGACTTGGTGAAGGATCTTAGGGAGAAGAAGGTCGAGGAATTCTTCAAGGGCTTGAAGAGAGTTGACAAAAAGGATGGTGAAGTTAGTAGTATCAATGCAGAGCCTTTTCTTTCATCGAGGAGGACTGGACTCCCCCCGGTATGGGACAGTCCACATGGCACTGTGGTTTTTATTAACAAACCAAAGGGCTGGACCTCATTCACAGTTTGTGGTAAGCTGCGCCGCGTTGTTAAAGTAAAAAAGGTAGGCCATGCTGGAACACTTGATCCCATGGCTACTGGTTTATTGATTGTTTGTGTTGGAAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATCAAGGGTTATAGTGGGGTCTTCCGTCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAACACATCAAAGATGAGGACATAAAGAGAAACACACATAACTTTATGTTTTGAGATCAGATGGTTGGGGGTGAAAGGATGTACGACAAGGCGAGGAGAGGAGAAAACGTTGAACTTTCACCTAGACGAATCTCAATACTCCAGTTTGACATAGAGCGCAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACGTGTTCTAAAGGGACATACATTCGGTCATTGTGCGCGGATTTTGGGAAGGCTGTTGGCAGTTGCGCCCATTTAACTGCTCTGCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCTTGGGACTTCCAAGAACTTGAAGAGGCTATTACCAAAACTTACCTCTAA 1641 0.4656 MAKSFSLTHHLSLLLLHSHSHRLFIPSTTLLPLPLHHHHPFSLSPFHKSLSTNPTPYPLQYELIINRPVQKHPPRVRRNAAQALSEPHEPDEPEEQEPTSELRLDSWVDRKLSFDSDSGQPSSSNLELDKAKRKYYNKRRKRMYGSDSEEEEARLRNEEKFVELKPEVVELPTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPNQCLDKAFLKPGESNLNANANANLNENENVDGGVRSKGKGRKTAGVREEKKDDKGDNKLVFFDEKREEEKKGDGDLVKDLREKKVEEFFKGLKRVDKKDGEVSSINAEPFLSSRRTGLPPVWDSPHGTVVFINKPKGWTSFTVCGKLRRVVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNTHNFMFXDQMVGGERMYDKARRGENVELSPRRISILQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKAVGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKTYL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02899 546 MobiDBLite consensus disorder prediction 241 259 - -
Arst5g02899 546 CDD PseudoU_synth_EcTruB 338 540 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Arst5g02899 546 Pfam TruB family pseudouridylate synthase (N terminal domain) 357 498 IPR002501 GO:0006396
Arst5g02899 546 Gene3D Pseudouridine synthase 332 545 - -
Arst5g02899 546 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 206 544 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Arst5g02899 546 SUPERFAMILY Pseudouridine synthase 337 541 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Arst5g02899 546 MobiDBLite consensus disorder prediction 70 102 - -
Arst5g02899 546 NCBIfam tRNA pseudouridine(55) synthase TruB 337 537 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Arst5g02899 546 FunFam tRNA pseudouridine synthase B 332 545 - -
Arst5g02899 546 MobiDBLite consensus disorder prediction 226 259 - -
Arst5g02899 546 Pfam tRNA pseudouridylate synthase B C-terminal domain 499 542 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02899 Arst-Chr5 84590014 84594451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02899 338 520 NAC Transcription Factor Family AT3G57150 30.366 2.41e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02899 K03177 - qsa:O6P43_004707 666.381