Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02889 ATGTTATACTGCAAAGGAGCTGCTCACAAATTTACTCAAGCTATTGAACTATATACGCAAGCAATTGAACTAAACGATAAAAATGTGGTTTACTACGCTAATCGTGCCTTTGCGCATCTTCGGCTTGAGGAATACGGTAGTGCCATACAAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATACTCAAAGGGGTATTATAGGCGAGGTGCAGCTCATCTTGCTATGGGAAAATTCAAGGAGGCTCTAAAAGATTTTCAGCAGGTCAAGAAAATATGCCCAAATGACATTGATGCATCAAAGAAATTGAAGGAGTGTTAA 321 0.3894 MLYCKGAAHKFTQAIELYTQAIELNDKNVVYYANRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAHLAMGKFKEALKDFQQVKKICPNDIDASKKLKEC 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02889 106 Gene3D Tetratricopeptide repeat domain 4 106 IPR011990 GO:0005515
Arst5g02889 106 PANTHER LD24721P 8 104 IPR047150 -
Arst5g02889 106 SMART tpr_5 29 62 IPR019734 GO:0005515
Arst5g02889 106 SMART tpr_5 63 96 IPR019734 GO:0005515
Arst5g02889 106 SMART tpr_5 1 28 IPR019734 GO:0005515
Arst5g02889 106 Pfam Tetratricopeptide repeat 8 62 - -
Arst5g02889 106 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Arst5g02889 106 ProSiteProfiles TPR repeat profile. 29 62 IPR019734 GO:0005515
Arst5g02889 106 Pfam Tetratricopeptide repeat 64 96 IPR001440 GO:0005515
Arst5g02889 106 SUPERFAMILY TPR-like 8 106 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02889 Arst-Chr5 84458317 84459076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02889 10 88 U-box Gene Family AT3G07370 31.646 6.63e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02889 K04460 - adu:107489893 218.009