LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst5g02839	ATGGCTCTGCAATCTTCCTTCTCCTCCTCTTCCATCCATTCTTCTTCTTTTTCTTCCCCCTCCTCTTTCAGCTATGCTTACAAATATGATGTGTTTATTAGTTTCAGAGGCCAAGATACTCGCTATGGTTTTACTGGCTATCTTTATGATGCTCTTTCTAATAAAGGAATTCATGCCTTCATTGATGATGAGGAGCTTTCAAAAGGAGACCAAATCACACCCTCACTTCTCAGCTCAATCCAAGAGTCTAGGATTGCCATCATTGTCCTCTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTCCACATCCTTCACTGCATCAAGGGAAATAATCGGTTGGTTTTGCCCGTTTTCTACAATGTTGATCCTTCTGATGTTCGCCATCTGAAAAAGAGTTTTGGAACAGCAATGGCTAAGCATGAGGAGAGATTCAAGAATGACATGAACAAGGTGCTCAAATGGAAGAAGGCTCTGCGTCAAGTAGCTGATTTGTCTGGCTATCATTTCAAAGATGGGGATGGATATGAACACAAGTTTATTAGAAATATCGTGGAAAACATCTCAAGAAAGATTAGGTGTGTACCTTTGCGTGTTGCTGATTACCATGTTGGACTAGAATCTCGAGTACCGGAAGTAATTTCCCTTTTGGAAATGGATTCTAGTGATCGAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTCATGCTGTTTATAATTCGATTGCTGACAATTTTGAAAGTGTGTGCTTTCTTGAAAATGTGAGAGAAAATTCAAATAAATATGGATTAGTACATCTTCAAAATTTCCTTCTTTGTAAGATATTAGGAAAGGAGGGAGTCCATATTATAGGTGTTAAAGAAGGAACCTCACAGATACAACAAAGGCTTTGTCGAAAGAAAGTTCTTTTGGTTTTGGATGATGTTGATGATTGCAAGCAGCTCCAGGCCATTGCTGGAAAACTTGATTGGTTTGGTCCGGGTAGCAGAGTTATTATTACAACACGAGACACACATTTGCTAAAATGTCATGATGTGCAAAACACATTCGAAGTAAAGGATTTAAATGAGACAGAGTCTTTTCAATTGCTTATTAAAAAAGCATTTGAAAATGACAATGTTGTCCCAAGTTACACAAATGTCTTAAATCGTGCAATAACTTATGCATCTGGACATCCACTGGCGTTAGAAATAATAGGCTCCAACTTGTTTGGGAAAGAAGTAGAAGTATGGGAATCTGCATTGGATCAATTTGAAAAACATCTTGATAATAAAATACATAAGATACTTCAAGTGAGTTTTGATGCTTTGGGAAAAGAAGAGCAGAGTATTTTTCTTGATATTGCTTGTTGTTTTAAAGGATATACATTAAAGGAACTTACAGATATACTTCAAGCTCATTATGGGAGTTGCAGGAGATATCATATTGGAGTCTTGATTGAGAAATCTCTCATAAAGATTGATCTACACAAAGTAACATTACATGATCTAATAGAGGATATGGGCAAAGAAATATATCGAGAACAATCATCAGAAGTGCCTGGAAAGTGTAGTAGGTTATGGTTTCATGAAGATATAGTTAAAGTTTTAGAAGATTACAAGGGAACTAGTGCCATTGAAATCATACATTTGGAATTTCCTTTATTTAGAAAGGAAGGAGGTGAAGATCCATCGGAAAAAGAGAAAAATGATGATGTAGAAGTAAAATGGGATGGAACAGCTTTTAAAGAGATGAAAAATCTCAAAACACTAATCATAAAAAATGGTCGTTTTTCCAAAGGTCCCAAATATCTTCCAAATAGTTTAAGAGTATTGGAATGGAGGAAGTATCCTTCGAGGCATTTTCCGCCTAATTTTGATCCAGAAAAGCTTTCCATACTCAAGTTGCCTGATTATCAATACATGTCACCCAAGTTGGATAGCTTATCCAAGATGATGATCACCTTAAAAGTTTTGAACTTTGACAACAGTAATTCTTTAAAAGAGATACCTGATATGTCTAGTCTTCAACTTTTACAAGAATTTTCGTTTAGAGGATGTAAAAATTTAGTTACAGTTCACAGCTCAGTTGGTTTTTTACCTAAACTAAAAATATTGAATGCCGAAGAATGCAGCAAGCTGAGGAGTTTTCCCCCTGCTATCAATTTACCCTCACTGGAAGAACTGGGTCTATATGGTTGCTCAAGCCTTGAGAATTTTCCAGAAATTCCAGAAGAGATGGAAAATCTTGAAATGCTTCAATTGCAGGGCACTGGCATAAAAGATTTTCCATGTTCATTTCGTAATCTTTCTAGACTGTGCCATTTGAAAATGAGCGGAGGTAAAATGTGTAAGATACCAAGTGTCATTGGCATGATGCCAGAATTGGCTTTTTGTGAGATTGATGGAGAAGGCAATATGGGGTGTGTATCAGCAAAACAGGAGGAGAGTCTTCAAGGAATACTCACTCACTTCCTTCCCTCTTCAAATATGAAATTGCTTTCTCTCTTTAACAGCAATCTGTCTGATGATTTTTTTCCCTTGGCTGTTGCATGGTTTCCCAATGTGGAAATGTTAGACCTAAGAGGCAATAATTTCACAGTCCTTCCTGAATGCATCCAACAATTTCTCTTTCTAGATTCCATCATTGTGGATCACTGCAAGCATCTTCTAGAGATTAAAGGGATTCCACCAAAGTTGGAACATTTCTCAGCAGTAAACTGCAAATCCTTGAGCCCTAGGGCCACAAGCATGTTACTCAATCAGGAATTGCACGAGGGTAGAAGGGCTCGGTTTGTGATGCCAGGTGAAAGGATTCCAAGGTGGTTTGAGCACCGCAGCAGCGGAGCTTCTATTTCTTTCTGGTTTCGCGGCACCGAATTCCCTTCGAAATCTCTTTGTGTTGCAATTCTACTCAAAGATGACATCCCTTCCCCAGATCAAGTAACAACCACGTTGTCCATCAAGATCAAATGCAACCAAGTTTCCCTTCCATGGGTCCTGATGATCACAATGGATCAATTATGTATTTTTAATCTGAATACAGTAGATTATCATAAAGCACTACATTTTGAAAAAGGATGGAATCTTATGGAGGTTTCATATGAGGCAAGTCAACAGGACGATTTCTACTACAAAGTGGTCTCAAGCGAATCAATTGCAAAAGAGATTGGAATTCACGTAGTGAAGCAAGAGAGTAGTAGTGTAATTCAAGATATTCGATTCACTGATCCATACAAAATGACACAACTAATTATAATGATGATCATGCTCTCAATGATATTCCCCAACCATAACAAGCACCCCTTGCTCCTCCAAACATGCATTGGTTTGTGGACATTGCTCTTTCTGTAA	3363	0.3785	MALQSSFSSSSIHSSSFSSPSSFSYAYKYDVFISFRGQDTRYGFTGYLYDALSNKGIHAFIDDEELSKGDQITPSLLSSIQESRIAIIVLSPNYASSSFCLDELVHILHCIKGNNRLVLPVFYNVDPSDVRHLKKSFGTAMAKHEERFKNDMNKVLKWKKALRQVADLSGYHFKDGDGYEHKFIRNIVENISRKIRCVPLRVADYHVGLESRVPEVISLLEMDSSDRVHMVGIHGIGGIGKTTLAHAVYNSIADNFESVCFLENVRENSNKYGLVHLQNFLLCKILGKEGVHIIGVKEGTSQIQQRLCRKKVLLVLDDVDDCKQLQAIAGKLDWFGPGSRVIITTRDTHLLKCHDVQNTFEVKDLNETESFQLLIKKAFENDNVVPSYTNVLNRAITYASGHPLALEIIGSNLFGKEVEVWESALDQFEKHLDNKIHKILQVSFDALGKEEQSIFLDIACCFKGYTLKELTDILQAHYGSCRRYHIGVLIEKSLIKIDLHKVTLHDLIEDMGKEIYREQSSEVPGKCSRLWFHEDIVKVLEDYKGTSAIEIIHLEFPLFRKEGGEDPSEKEKNDDVEVKWDGTAFKEMKNLKTLIIKNGRFSKGPKYLPNSLRVLEWRKYPSRHFPPNFDPEKLSILKLPDYQYMSPKLDSLSKMMITLKVLNFDNSNSLKEIPDMSSLQLLQEFSFRGCKNLVTVHSSVGFLPKLKILNAEECSKLRSFPPAINLPSLEELGLYGCSSLENFPEIPEEMENLEMLQLQGTGIKDFPCSFRNLSRLCHLKMSGGKMCKIPSVIGMMPELAFCEIDGEGNMGCVSAKQEESLQGILTHFLPSSNMKLLSLFNSNLSDDFFPLAVAWFPNVEMLDLRGNNFTVLPECIQQFLFLDSIIVDHCKHLLEIKGIPPKLEHFSAVNCKSLSPRATSMLLNQELHEGRRARFVMPGERIPRWFEHRSSGASISFWFRGTEFPSKSLCVAILLKDDIPSPDQVTTTLSIKIKCNQVSLPWVLMITMDQLCIFNLNTVDYHKALHFEKGWNLMEVSYEASQQDDFYYKVVSSESIAKEIGIHVVKQESSSVIQDIRFTDPYKMTQLIIMMIMLSMIFPNHNKHPLLLQTCIGLWTLLFL	1120

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst5g02839	1120	PRINTS	Disease resistance protein signature	399	413	-	-
	Arst5g02839	1120	PRINTS	Disease resistance protein signature	306	320	-	-
	Arst5g02839	1120	PRINTS	Disease resistance protein signature	724	740	-	-
	Arst5g02839	1120	PRINTS	Disease resistance protein signature	230	245	-	-
	Arst5g02839	1120	MobiDBLite	consensus disorder prediction	1	20	-	-
	Arst5g02839	1120	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	194	458	IPR027417	-
	Arst5g02839	1120	Pfam	TIR domain	28	194	IPR000157	GO:0007165
	Arst5g02839	1120	ProSiteProfiles	TIR domain profile.	27	195	IPR000157	GO:0007165
	Arst5g02839	1120	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	29	792	IPR044974	GO:0006952
	Arst5g02839	1120	Gene3D	Ribonuclease Inhibitor	751	928	IPR032675	-
	Arst5g02839	1120	Gene3D	Ribonuclease Inhibitor	581	750	IPR032675	-
	Arst5g02839	1120	SUPERFAMILY	Toll/Interleukin receptor TIR domain	18	171	IPR035897	-
	Arst5g02839	1120	FunFam	Disease resistance protein (TIR-NBS-LRR class)	25	197	-	-
	Arst5g02839	1120	SUPERFAMILY	L domain-like	504	915	-	-
	Arst5g02839	1120	Gene3D	-	364	448	IPR042197	-
	Arst5g02839	1120	Pfam	NB-ARC domain	213	445	IPR002182	GO:0043531
	Arst5g02839	1120	Gene3D	-	27	192	IPR035897	-
	Arst5g02839	1120	Gene3D	-	193	360	IPR027417	-
	Arst5g02839	1120	SMART	till_3	28	168	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst5g02839	Arst-Chr5	83801388	83805415	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst5g02839	23	806	WRKY Transcription Factor Family	AT4G12020	30.359	5.69e-80	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst5g02839	-		-	ahf:112751484	1454.5