Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02838 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAGCCCTCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAACTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACTTCAGCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCGTTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACCACCGGAACATTCCGGTTTCCCGGAGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCTGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTGGCGAATCGGCGAAGCAGATCCCCTGTAAGCACATATACCATTCTGATTGCATCTTGCCATGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTCCCCAGTGAACCGGTCTGTGGGAGCAGAGTGGTGGCGGTGGTGGTGGTGTTGGCGGTGACAATGATGGCGGGGATAATAGGCAAACGTTGGAGAGGAGGGTGTTTAGGGTTTCTTTGCCGTGGCCGTTTAGGCAATTCGGTGGTTCTCCTGCGGAGACAAGCAATGTTGGGAACAACAACAACAGCAACAGTGGCGGCAACAACAACAGTGGGCAACCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCAGAGACCAGACAGGAAGATCTTGATTGA 1077 0.5673 MSSSGGVTSGSPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNFSNPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLGESAKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPPQXTGLWEQSGGGGGGVGGDNDGGDNRQTLERRVFRVSLPWPFRQFGGSPAETSNVGNNNNSNSGGNNNSGQPNSESRGNRNFESETRQEDLD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02838 358 MobiDBLite consensus disorder prediction 246 358 - -
Arst5g02838 358 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Arst5g02838 358 FunFam E3 ubiquitin-protein ligase RING1-like 163 249 - -
Arst5g02838 358 Pfam Zinc finger, C3HC4 type (RING finger) 201 242 - -
Arst5g02838 358 CDD RING-H2_RNF126-like 201 243 - -
Arst5g02838 358 MobiDBLite consensus disorder prediction 313 345 - -
Arst5g02838 358 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Arst5g02838 358 SUPERFAMILY RING/U-box 186 249 - -
Arst5g02838 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 247 - -
Arst5g02838 358 SMART ring_2 202 242 IPR001841 -
Arst5g02838 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02838 Arst-Chr5 83798697 83800343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02838 160 258 C3H Transcription Factor Family AT5G15820 55.556 2.44e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02838 K11982 - gmx:100784504 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g02838 5 83798697 83800343 Arst5g02838 5 83798697 83800343 ECH