Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02605 ATGGATGAGGAAGAGGAGGAGGAAGAAGAGGTTCTCAAAAAGGAGGAGGATCCTAACGCCATTACCAACTTCAGAATCTCCGAGCCTCTTAGGGCAAAGCTCAAGGAGAAGGGAATTGAGTCTCTCTTCCCGATTCAGGCCATGACCTTCGATATCATCCTCGATGGCTCTGATTTGGTTGGTCGCGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAATCAATGGTCCTGCCAAAGCGTTCAGAAAGACCGGTTTTGGGAGGGCTCCAAGTGTCCTTGTTCTTTTACCCACCAGGGAATTGGCAAGTCAGGTGTATGCTGATTTTGAAGTTTATGGTGGAGCAATGGGATTGAGTTCTTGCTGTTTATATGGTGGGGCTCCATACCAGACTCAAGAGAGTAAGCTTAGGAGAGGAGTTGATATTGTTGTTGGCACTCCAGGTCGTGTGAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAGCTAAAGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTCCGAATGGGTTTTGTTGAAGATGTGGAACTAATTCTAGGCAAGGTACAAGATGTTAGCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCTGGAAAATTTCTGAAACCAGATAAAAAAACTGCAGATCTGGTGGGAAATGCAAAAATGAAGGCTAGCACCAATGTTAGACATATTGTTCTTCCATGTAACGTTTCTGCCAGGGCCCAGCTTATCCCAGACATTATACGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCCGGCTTGTTGCCCGGAGCAAGAGCTCTACATGGTGATATACAGCAATCACAACGTGAGGTTACACTGGCTGGTTTTAGGTCTGGGAAATTCATGACTTTGGTTGCCACAAATGTGGCAGCGAGGGGTTTAGATATTAATGATGTTCAGTTAATTATCCAGTGTGAGCCCCCACGTGATGTAGAAGCCTACATTCATCGATCTGGGCGCACAGGAAGAGCAGGAAATACGGGAGTTGCTGTAATGCTTTATGATCCCAGGCGATCAAATGTATCTAAAATAGAAAGGGAATCGGGTGTGAAATTTGAGCACATATCTGCCCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGAGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCGGCCGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGCTGATCTACTTGCAAAAGCACTTGCCAAGGCTGTGGGCTTTACCGAGATAAAGAAAAGATCACTTTTGACTTCCATGGAGAATTACGTTACACTGCTTCTTGAGATTGGAAAACCTATGTTCACGCCGTCCTTTGTTTTCGGAATCCTAAGGAGATTCTTGCCCGAGGAGCAGGTTGAGGCTGTGCAGGGTTTGACTCTCACTGCAGATGGAAATGGTGCAGTGTTTGATGTACCAGCCAAGGATTTAGACATTTATCTTACTGGTCAGCAGAAAGCTGGTAATGTAAGCCTAGAGGTGTTGAAAACATTACCACGTTTGCAAGAAAGAGAGCAATCAAGGGGGGGCAGATTTGGTGGCGGTCGAGGGTTTAATGATAGAAATGGTGGGAACAGGTTTGGAAGAGGTGGTGGCAGGAATGGTAGATTCGGCCAGAACGATAGGTTTTCGAATGGGAGAGGTAATTTCAACAAAGGTGGAAAGAGATGGTAA 1812 0.4564 MDEEEEEEEEVLKKEEDPNAITNFRISEPLRAKLKEKGIESLFPIQAMTFDIILDGSDLVGRARTGQGKTLAFVLPILESLINGPAKAFRKTGFGRAPSVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVQDVSKVQTLLFSATLPDWVKHISGKFLKPDKKTADLVGNAKMKASTNVRHIVLPCNVSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAADLLAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGKPMFTPSFVFGILRRFLPEEQVEAVQGLTLTADGNGAVFDVPAKDLDIYLTGQQKAGNVSLEVLKTLPRLQEREQSRGGRFGGGRGFNDRNGGNRFGRGGGRNGRFGQNDRFSNGRGNFNKGGKRW 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02605 603 CDD DEADc 30 227 - -
Arst5g02605 603 FunFam DEAD-box ATP-dependent RNA helicase 7 470 542 - -
Arst5g02605 603 Pfam Helicase conserved C-terminal domain 265 364 IPR001650 -
Arst5g02605 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 176 184 IPR000629 -
Arst5g02605 603 CDD GUCT_RH7_like 460 545 - -
Arst5g02605 603 SMART helicmild6 287 364 IPR001650 -
Arst5g02605 603 Pfam DEAD/DEAH box helicase 43 220 IPR011545 GO:0003676|GO:0005524
Arst5g02605 603 SUPERFAMILY RNA-binding domain, RBD 457 540 IPR035979 GO:0003676
Arst5g02605 603 Gene3D - 248 470 IPR027417 -
Arst5g02605 603 SMART ultradead3 38 250 IPR014001 -
Arst5g02605 603 MobiDBLite consensus disorder prediction 550 603 - -
Arst5g02605 603 Pfam GUCT (NUC152) domain 453 548 IPR012562 GO:0003723|GO:0004386|GO:0005524
Arst5g02605 603 CDD SF2_C_DEAD 247 373 - -
Arst5g02605 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 403 IPR001650 -
Arst5g02605 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 232 IPR014001 -
Arst5g02605 603 Gene3D - 471 542 - -
Arst5g02605 603 Gene3D - 1 232 IPR027417 -
Arst5g02605 603 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 433 - -
Arst5g02605 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 376 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02605 Arst-Chr5 80330150 80334480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02605 4 370 Eukaryotic Initiation Factors Gene Family AT1G72730 30.563 1.15e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02605 K16911 - gmx:100820207 919.072