Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02515 ATGGAACCTTGGAGTTATGTTCCTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTCAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTCGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTCTCTTGGGGAAGAAGAATCCGAGTCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCAAGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAGAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCAATTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAATGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAAACAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAGTCTTCCTTACAAAAGAGGCCACAATTTTCATTTCCAGACATATTTCGAAGTGGCAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAGTTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCATCGCGCCCCTCAGAAGAAAATCCTTTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCAGTAGTGATGACATTTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGAACTCTTGTTTCCCAGCATTGTAA 1347 0.4254 MEPWSYVPDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGFNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSSLGEEESESKHLSSLGELKAQDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFQLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILHSHQGARYMESSLQKRPQFSFPDIFRSGKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSRPSEENPLASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRASSDDICSPLEHGSTVDLFQLSSNLERVEQKRNSVLVKWENENSCFPAL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02515 448 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Arst5g02515 448 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Arst5g02515 448 Pfam SBP domain 173 246 IPR004333 GO:0003677
Arst5g02515 448 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Arst5g02515 448 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Arst5g02515 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 138 347 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02515 Arst-Chr5 70075773 70079553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02515 100 447 SBP-box Gene Family AT1G69170 39.062 3.83e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst5g02515 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02515 - - vum:124825483 576.244