Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02486 ATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATTTTCGAGGGCTTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATACAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCGAATTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGAGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTGCTCAAATATCTAGAGGAACACCCGTCTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGATGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGATATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAGGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTCATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTCTCTGCCTTCCTTGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 1431 0.4123 MKAPIEMVVLDEEGDTIQCTVKDIFVPIFEGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVPLNGFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFELLKYLEEHPSLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIADIKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRRGLRELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEAAKFLGVSAKDLRQSCVTKGVEKNSCPEEIHKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILGAKKHIEEIGEESVSSKSKKGKWVVVED 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02486 476 CDD RPA1_DBD_A_like 5 70 - -
Arst5g02486 476 SUPERFAMILY Nucleic acid-binding proteins 239 388 IPR012340 -
Arst5g02486 476 SUPERFAMILY Nucleic acid-binding proteins 5 75 IPR012340 -
Arst5g02486 476 CDD RPA1_DBD_B_like 103 203 - -
Arst5g02486 476 Gene3D - 231 400 IPR012340 -
Arst5g02486 476 MobiDBLite consensus disorder prediction 424 445 - -
Arst5g02486 476 SUPERFAMILY Nucleic acid-binding proteins 83 207 IPR012340 -
Arst5g02486 476 PANTHER OS03G0429900 PROTEIN 240 399 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst5g02486 476 Gene3D - 2 76 IPR012340 -
Arst5g02486 476 Pfam Replication factor-A C terminal domain 254 376 IPR013955 -
Arst5g02486 476 Pfam Domain of unknown function DUF223 6 96 IPR003871 -
Arst5g02486 476 Gene3D - 77 211 IPR012340 -
Arst5g02486 476 CDD RPA1_DBD_C 242 375 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02486 Arst-Chr5 66532001 66537749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02486 9 384 Core DNA Replication Machinery Family AT5G08020 24.297 1.61e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02486 - - adu:107477146 938.717