Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst5g02422 | ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCCTCTTTGGCTTCTCTGATTCTCAGTCTCGGGATTCTTCATCGCAAAACCAAGATAACGACGAAATGGGAGAAAGGATCGCCGATACTCCCAACCGAGAGAGGATCATACTAGTAAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGGTGAAGTTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAAGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAGAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATAACGACGATCAGAATCACAATCAGAATCAAAATCAAGATTCTTCTGGTGGTGGTGATGATGATCCTAATTCGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAG | 759 | 0.4519 | MASEPDVFERFVRNRDMTLFLPFLFGFSDSQSRDSSSQNQDNDEMGERIADTPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEGEVEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGKKRDSEGEEEQEGGERERRRIGNGEVWVSFSFNRGISRRHNDDQNHNQNQNQDSSGGGDDDPNSGDYASSTAGGDAEAEN | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst5g02422 | 252 | MobiDBLite | consensus disorder prediction | 219 | 242 | - | - | |
| Arst5g02422 | 252 | MobiDBLite | consensus disorder prediction | 207 | 252 | - | - | |
| Arst5g02422 | 252 | MobiDBLite | consensus disorder prediction | 167 | 194 | - | - | |
| Arst5g02422 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 167 | IPR013083 | - | |
| Arst5g02422 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 161 | IPR001841 | - | |
| Arst5g02422 | 252 | MobiDBLite | consensus disorder prediction | 30 | 51 | - | - | |
| Arst5g02422 | 252 | FunFam | E3 ubiquitin-protein ligase RNF181 | 85 | 167 | - | - | |
| Arst5g02422 | 252 | SMART | ring_2 | 120 | 160 | IPR001841 | - | |
| Arst5g02422 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 38 | 165 | - | - | |
| Arst5g02422 | 252 | SUPERFAMILY | RING/U-box | 104 | 166 | - | - | |
| Arst5g02422 | 252 | Pfam | Ring finger domain | 119 | 161 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst5g02422 | Arst-Chr5 | 58596728 | 58597859 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst5g02422 | 10 | 214 | C3H Transcription Factor Family | AT1G26800 | 52.195 | 1.70e-62 | 193 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst5g02422 | - | - | adu:107489464 | 434.491 |