Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02400 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGCGAACCGGGTTACCCAGTTATGTTTACTGGTCCATTTCGTGAGAATGTGAATGCACTTCTTGAATATGCGAATTCGGAGAGTAACTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAACCAATTGAAGCTTCTTTGAATCGCCACTGCAAGCATTGTCAATATGTTGGATGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCGAAGGAGGCATTGGCTACATGCTCGAGTTGTGAAGGGTGCTGTGATGCTATTGCCACAATGAACAACAACAACAACAACAACAACAACAACAACAGTAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTTCACAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTTGGTAGAGGTTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTCTACTTGCTGATACACCACATTGGCGCAAATAATTTCAACCACCACGAAGTGCCCGTCATTTTCTCACGCTACCAAACCCTGTCCGGCCAATCGCTAGTCACACTCGGCGACTTATTTCGCTACATGCTCGAGCTAAAGTCGCGCCTCCCGCGGGAGACTCGAGTTATTGGTAACAATAATTATAGTTGTTCCTACAACAACACTAGTAGTACTAGTGCCAGTGCATTGGTTGAGTCCAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGCTAAAGTCACTAGGGAATCATGTTGTTGGGAACTACTTGGTACGTAGGAGCTTAAATCCTGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCATAATTGCAATGAAGGTAGTTTGGCCATCAATAATAGTAATAGTAACAATAATAATAAAATTAAGGATAAGTACAAGATTTCAAGGGCTCAACTTATGAAGGACATGCTTTATTTGTATAAGTACATCCTAATTGACCCTAAACCAATGATGGGGTTGGAGTTTCTCTCAGCCATACCGTTGGCGGCTAGGATAATTCTCGACACCAAGTTTCTCGTCAAAGACTACTCTGGCGAGGTTCCGACTTTTGGAGTTGAGTTAGGCTCGGACGGAAAACTGAACCTTTATTGCACAATTTTGTTGCGGAACAATTCATGCATTGATGAGGAGTTCTTGAGTAAGGCTATGCCACCCTATGAGTGCATCACTTTGGGAAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAATTTTAGGGAAATTTATTGGGGACTAAGGGGATTTGTGGTAGAATCAATTGGGAATTTTAGTGCCAATAATATTATTAGTAATAATGGGAAAGATATGGTTTTGGGGTTAATTGAAGTGATGGGTGGGAAAATAGTGTTAGAGGGTTGGATTGGTGAAATAATTGGAATGATGAATAACAACATGATGATTGGCCAAATGTGTGAGAATGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGAGAGAGGTTGGTGTGTTGTGATATTTGTGAAACTTGGCAGCATACAAGGTGTGTTCGAATTCCTAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCATTGCCATAA 2124 0.4068 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANSESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGWGHHFICNKKYHFVLPSKEALATCSSCEGCCDAIATMNNNNNNNNNNNSNNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTSQKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNFNHHEVPVIFSRYQTLSGQSLVTLGDLFRYMLELKSRLPRETRVIGNNNYSCSYNNTSSTSASALVESNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYHNCNEGSLAINNSNSNNNNKIKDKYKISRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVKDYSGEVPTFGVELGSDGKLNLYCTILLRNNSCIDEEFLSKAMPPYECITLGSNATINELKLEVERNFREIYWGLRGFVVESIGNFSANNIISNNGKDMVLGLIEVMGGKIVLEGWIGEIIGMMNNNMMIGQMCENDPKNGIVECTCGTKEDDGERLVCCDICETWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02400 707 SUPERFAMILY FYVE/PHD zinc finger 636 699 IPR011011 -
Arst5g02400 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 701 IPR013083 -
Arst5g02400 707 Pfam PHD-finger 652 698 IPR019787 -
Arst5g02400 707 CDD PHD_MMD1_like 651 696 - -
Arst5g02400 707 ProSiteProfiles Zinc finger PHD-type profile. 649 699 IPR019787 -
Arst5g02400 707 SMART PHD_3 651 697 IPR001965 -
Arst5g02400 707 ProSitePatterns Zinc finger PHD-type signature. 652 696 IPR019786 -
Arst5g02400 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02400 Arst-Chr5 57179084 57185717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02400 10 707 PHD Transcription Factor Family AT5G22260 50.425 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst5g02400 PHD 2.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02400 K26271 - gmx:100780210 1068.53