Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02324 ATGATGAGTAGTGGGAAAGAGGTAAATAACAGTGAAAAGTCCAAAGTGTGTGCAAGAGGGCATTGGAGGCCTTCAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCAGAACTGGAACCTCATTGCTCAGAATCTAGAAGGAAGATCAGGGAAGAGTTGTAGGTTGAGATGGTTCAACCAACTAGATCCAAGAATAAAGAAGAATCCATTCAGTGAAGAGGAGGAAGAGAGGCTAATGGAAGCACATAGAGTGTACGGTAAAAAATGGGCCATGATTGCAAGGCTATTTCCTGGCAGAACAGATAATGCTATCAAGAACCACTGGCATGTTATCATGGCCAGAAACTACAGGGAGCAAAAATCCTTTACTTCTAGGACCAATAGGAAAATCAGAAGATATAATACTAATAACCGTCAGAGCCTTCTCTTCAGTAGAAATAACATCACCACCAGTACTACTAGTGGTTATTATGGTGGTCAGTTTATTAATGGTTCAGCAACTATTACTCACATGGCTACTGCTTGTTGGAGACAACAACAAGATAATAATGAAGAGGACCCTAATGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTGTTTCTTCTCTGCTGGTTCCTCTTCAACAATTACAACAACACCCCATGTTTGTTTGGCCATGGAACTATCATCGTCATCAACAACATCATCCTTTGCTCAAGACAGGAACAAGGTCCCTATTAGGGACCCCCATGATGCATCTTCTAATTATACACCACCATTTATTGACTTCCTCGGAGTAGGAGCCACATGA 807 0.4151 MMSSGKEVNNSEKSKVCARGHWRPSEDSKLKELVALHGPQNWNLIAQNLEGRSGKSCRLRWFNQLDPRIKKNPFSEEEEERLMEAHRVYGKKWAMIARLFPGRTDNAIKNHWHVIMARNYREQKSFTSRTNRKIRRYNTNNRQSLLFSRNNITTSTTSGYYGGQFINGSATITHMATACWRQQQDNNEEDPNGFYNQQQFPFDYCFFSAGSSSTITTTPHVCLAMELSSSSTTSSFAQDRNKVPIRDPHDASSNYTPPFIDFLGVGAT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02324 268 CDD SANT 82 113 IPR001005 -
Arst5g02324 268 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Arst5g02324 268 CDD SANT 22 63 IPR001005 -
Arst5g02324 268 SUPERFAMILY Homeodomain-like 19 112 IPR009057 -
Arst5g02324 268 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Arst5g02324 268 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Arst5g02324 268 Gene3D - 72 146 - -
Arst5g02324 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Arst5g02324 268 MobiDBLite consensus disorder prediction 1 21 - -
Arst5g02324 268 ProSiteProfiles Myb-like domain profile. 19 65 IPR001005 -
Arst5g02324 268 SMART sant 70 118 IPR001005 -
Arst5g02324 268 SMART sant 18 67 IPR001005 -
Arst5g02324 268 FunFam MYB transcription factor 19 70 - -
Arst5g02324 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Arst5g02324 268 PANTHER MYB PROTEIN-RELATED 19 172 - -
Arst5g02324 268 Gene3D - 19 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02324 Arst-Chr5 49695454 49703341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02324 6 268 MYB Transcription Factor Family AT1G69560 44.487 1.53e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g02324 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02324 K09422 - cpap:110824138 232.261