Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02321 ATGGACCACCATACGAGTGGCAAGTGTACAAAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATAGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTCTGCTCTACTGATTTGGGACGAAAAGAATTTGAAGAGGCTTAAAAGCAGTGGAAAGTTAAAGAAAGTTCTTTGGAGACTAGGAATTTTGGTGGGTTACTTTTTCAAGCTCATGCCAATGCTATCAGAAATGTTATGA 471 0.3864 MDHHTSGKCTKFLVAVMVCLKYITRADIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHHLILSGTPIQNNIIDLWSLFDFLMPGFLGTERQVKSYFPFLILIITSALLIWDEKNLKRLKSSGKLKKVLWRLGILVGYFFKLMPMLSEML 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02321 156 Pfam SNF2-related domain 32 104 IPR000330 GO:0005524|GO:0140658
Arst5g02321 156 Gene3D - 2 137 IPR038718 -
Arst5g02321 156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 108 IPR027417 -
Arst5g02321 156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 91 IPR014001 -
Arst5g02321 156 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 22 103 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02321 Arst-Chr5 49009511 49010819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02321 26 88 RAD5 or RAD16-like Gene Family AT5G22750 47.619 2.29e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g02321 SNF2_N 8.8e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02321 K15192 - adu:107469552 301.212