Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02252 ATGGAATTGGAAGCTGATCATAATCACCATCACCATCACCATCAAAACGGAATCAGAACCAGACCTAATTTCCCTCTTCAGCTGTTGGAGAAGACTAAAGACGTCGAAGACTCAGTCGCGGAACAGCCATGCTCCACCGTCGCCGAACAACCCGGTGACGGAGCAGGCACCGCCGTCACTTTACAGGACCAGCAACAGAATACCACCAAGAAGCCGCCGCCAAAGCGGACCTCCACCAAGGACCGGCACACCAAGGTGGACGGCCGCGGCCGCCGGATCCGGATGCCGGCGGCCTGCGCCGCTCGCGTGTTCCAGTTGACGCGGGAGTTAGGGCACAAATCCGATGGCGAGACCATCGAGTGGCTACTACAGCAAGCGGAGCCGGCGGTGATCGCCGCAACCGGCACCGGCACCATCCCCGCCAACTTCACCTCGCTCAACATTTCGCTTCGGAGTTCCGGGTCTACCGTTTCGGCGCCGTCACACTACTTCAGAGGAAGCTACTTCAATCCTAGCACGTTCTCTTCGGCCGCCGTTGCGGCAGCTGTCGGCGGCGGAAGGATCCGCAGCGGAGCTGGCGATAATTGGGAGCGTAGCATGGGCATGAATATGAACATGAACATGAATATGAACATAGCAACGATGGAAGATTCTAGAAGGTTGTTGTTTCCAGGTTCATCGGAGAATTGTTCTAATTCCATGGGATTGAACTTCAACCCTAGCACCGTGAATGCCGTTCTCCAAGCAAAGCAAGAACTCCGTGAAGACGGCGCCGCCGCTGCTGGTGGTGGTGGAAATCTTGATTTGGATGGCGGTGATTGCGACGGAAACATGGCTAGAAAGAGAAGAATGGAACAAGAGGTTTCCGTTTCACACCAGATAGCAGGAAACTACTTGTTACAATCAAGTACCGCGGGTTCGGTTCCGGCGAGCCACGCTTCGAATCCCGCAACGTTTTGGATGGTGACTGGGCACCAAGGCATGAATGGTGGTGGCGGCGGCGGCGGCGGCGGTAGTAATAATGATCAAATTTGGGCAATTCCGTCACTGGGGAGTGGTGGTGGAGTTTATAGAGGGGGTATGCCTGGCGGTGTTGGTGGGATTCATTTCATGAATTTTGGTTCACCAATGTCTCTTATGCCTGGTGGACAACTAGGTTCCGCCATGGTCGGTGGCGGCAGCGGCGGTGGTGGAGCAATGCTGAGTGAAAGCAATAATTTAGGTATGCTTGCAGCACTTAATGCCTATAGGCAGATTCCGGCCAATGGCAGTGGCGTTTCGGAGTCTCCGGCAAGCACCGGAAACCACCAACATCACGGTGGAGATGATGGGCATGAAACAACAAGTCAACAGCAACATTCTTGA 1365 0.548 MELEADHNHHHHHHQNGIRTRPNFPLQLLEKTKDVEDSVAEQPCSTVAEQPGDGAGTAVTLQDQQQNTTKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVSAPSHYFRGSYFNPSTFSSAAVAAAVGGGRIRSGAGDNWERSMGMNMNMNMNMNIATMEDSRRLLFPGSSENCSNSMGLNFNPSTVNAVLQAKQELREDGAAAAGGGGNLDLDGGDCDGNMARKRRMEQEVSVSHQIAGNYLLQSSTAGSVPASHASNPATFWMVTGHQGMNGGGGGGGGGSNNDQIWAIPSLGSGGGVYRGGMPGGVGGIHFMNFGSPMSLMPGGQLGSAMVGGGSGGGGAMLSESNNLGMLAALNAYRQIPANGSGVSESPASTGNHQHHGGDDGHETTSQQQHS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02252 454 MobiDBLite consensus disorder prediction 1 90 - -
Arst5g02252 454 MobiDBLite consensus disorder prediction 421 436 - -
Arst5g02252 454 MobiDBLite consensus disorder prediction 57 73 - -
Arst5g02252 454 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
Arst5g02252 454 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 36 451 IPR005333 GO:0003700
Arst5g02252 454 MobiDBLite consensus disorder prediction 438 454 - -
Arst5g02252 454 Pfam TCP family transcription factor 77 181 IPR017887 -
Arst5g02252 454 MobiDBLite consensus disorder prediction 421 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02252 Arst-Chr5 43821561 43823833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02252 22 384 TCP Transcription Factor Family AT3G47620 39.808 1.63e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Arst5g02252 TCP 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02252 - - adu:107489244 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g02252 5 43821561 43823833 Arst5g02252 5 43821561 43823833 ECH
Arst5g02252 5 43821561 43823833 Arst1g04249 1 104966908 104968861 PCT