Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02229 ATGGCTTTCTTACCAGCAAATTTCATGCTACAAACCCCTCACCACCATGATGATCACCACCACCAACAACATCATCCACCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCATGGAGGGGGAGCAGCAACATTTCTAGGGAAAAGATCCATGTCATTCTCGGGGATTGATCTTGGAGGAGTAGAAGAAGGTAACAACAATGGGGATGAAGAATTATCAGATGATGGATCACAGATAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCACTTGAGAAGAGCTTTGAGTTAGGGAACAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCAAGGTCCCTTGGCTTGCAACCAAGGCAAATTGCAATCTGGTTTCAGAATCGAAGAGCAAGGTGGAAGATTAAGCAGTTAGAGAGAGACTACGATCAACTCAAGCGTCAATTCGAAGCCGTCAAATCAGACAATGATGCACTTCACGCCCAGAACCAAAAACTTCAAGCTCAGTGGTGCGAGCGATGGGTGCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTGAACAAAGACACAGAAGGATCATGCAGCAACAGAAGCGAGAACAGTTCAGAGATCAAGTTTGATATTTCGACAAGAACACCAACAACAACAACAACAACAACAACCACCATTGTTGATAGTCCTCTATCATCAAAACCATTCTTTCCATCTTCATCATCCTCCACTAGGCCGCCACATCAGCTTTTTCAGGTTTCGAGGCCCGAGATTCATCTTCATCAGTGTCATCAACAGAATAATAATAATAATAATCATGTGGTGGCTAAAGAAGAGAGTTTGAGCAGCATGTTTGTTGCCATGGATGATCAGTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 939 0.4388 MAFLPANFMLQTPHHHDDHHHQQHHPPSLNSILPTCSPHDYHGGGAATFLGKRSMSFSGIDLGGVEEGNNNGDEELSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKIKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQWCERWVQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPTTTTTTTTTIVDSPLSSKPFFPSSSSSTRPPHQLFQVSRPEIHLHQCHQQNNNNNNHVVAKEESLSSMFVAMDDQSGFWPWLEQQHFN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02229 312 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Arst5g02229 312 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Arst5g02229 312 Gene3D - 78 149 - -
Arst5g02229 312 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Arst5g02229 312 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Arst5g02229 312 CDD homeodomain 86 142 IPR001356 GO:0003677
Arst5g02229 312 SMART HOX_1 84 145 IPR001356 GO:0003677
Arst5g02229 312 Coils Coil 133 174 - -
Arst5g02229 312 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Arst5g02229 312 MobiDBLite consensus disorder prediction 223 254 - -
Arst5g02229 312 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Arst5g02229 312 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Arst5g02229 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 278 IPR045224 GO:0003700
Arst5g02229 312 Pfam Homeobox associated leucine zipper 141 174 IPR003106 GO:0006355|GO:0043565
Arst5g02229 312 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02229 Arst-Chr5 40025563 40028027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02229 1 312 Homeobox Transcription Factor Family AT1G69780 57.595 3.73e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g02229 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02229 K09338 - gmx:100808033 352.058