Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02228 ATGGCTTTCTTACCAGCAAATTTCATGCTACAAACCCCTCACCACCATGATGATCACCACCACCAACAACATCATCCACCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCATGGAGGGGGAGCAGCAACATTTCTAGGGAAAAGATCCATGTCATTCTCGGGGATTGATCTTGGAGGAGTAGAAGAAGGTAACAACAATGGGGATGAAGAATTATCAGATGATGGATCACAGATAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCACTTGAGAAGAGCTTTGAGTTAGGGAACAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCAAGGTCCCTTGGCTTGCAACCAAGGCAAATTGCAATCTGGTTTCAGAATCGAAGAGCAAGGTGGAAGATTAAGCAGTTAGAGAGAGACTACGATCAACTCAAGCGTCAATTCGAAGCCGTCAAATCAGACAATGATGCACTTCACGCCCAGAACCAAAAACTTCAAGCTCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTGAACAAAGACACAGAAGGATCATGCAGCAACAGAAGCGAGAACAGTTCAGAGATCAAGTTTGATATTTCGACAAGAACACCAACAACAACAACAACAACAACAACCACCATTGTTGATAGTCCTCTATCATCAAAACCATTCTTTCCATCTTCATCATCCTCCACTAGGCCGCCACATCAGCTTTTTCAGGTTTCGAGGCCCGAGATTCATCTTCATCAGTGTCATCAACAGAATAATAATAATAATAATCATGTGGTGGCTAAAGAAGAGAGTTTGAGCAGCATGTTTGTTGCCATGGATGATCAGTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 918 0.4336 MAFLPANFMLQTPHHHDDHHHQQHHPPSLNSILPTCSPHDYHGGGAATFLGKRSMSFSGIDLGGVEEGNNNGDEELSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKIKQLERDYDQLKRQFEAVKSDNDALHAQNQKLQAQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPTTTTTTTTTIVDSPLSSKPFFPSSSSSTRPPHQLFQVSRPEIHLHQCHQQNNNNNNHVVAKEESLSSMFVAMDDQSGFWPWLEQQHFN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02228 305 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Arst5g02228 305 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Arst5g02228 305 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Arst5g02228 305 Coils Coil 133 181 - -
Arst5g02228 305 Gene3D - 78 148 - -
Arst5g02228 305 MobiDBLite consensus disorder prediction 216 247 - -
Arst5g02228 305 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Arst5g02228 305 CDD homeodomain 86 142 IPR001356 GO:0003677
Arst5g02228 305 SMART HOX_1 84 145 IPR001356 GO:0003677
Arst5g02228 305 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Arst5g02228 305 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Arst5g02228 305 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Arst5g02228 305 MobiDBLite consensus disorder prediction 61 86 - -
Arst5g02228 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 271 IPR045224 GO:0003700
Arst5g02228 305 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02228 Arst-Chr5 40025563 40028027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02228 1 305 Homeobox Transcription Factor Family AT1G69780 58.900 1.40e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g02228 Homeodomain 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02228 K09338 - gmx:100808033 358.992