Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02220 ATGCAAGATAATATGAAGAAGCAGAAGCAGAAGCAGGTAGTGGTGGTGGCCAATAATGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTTATGTGGACTCAAGAGGAGGATGATATTCTGAGGGAGCAGGTTGGAATCCATGGAACTGAAAATTGGGGTATTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACTTACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCGGAGGAAGATATGCTCTTGTGCGAGGCTCAGAAACTATTTGGTAACCGGTGGACAGAAATATCAAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGGTTCTCCACATTGCGCAAAAAGAGAGCGAAATATGAAGCATTAGCAAAAGAGAACCACACTTCTTACACCAATTCAAATAATAAGAGGGTTATTCTACAACATGGACATGTTACAGATTCAGCATCAGAATCTGGTGTGTCTACTAAGAAGATGAGGAGGCCGCATATTCCAGTGGTAGAAGAAAGGATAAACTATGGAGACAGATTACATAAACAAAATGGAACTCAGATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTGCTACCTCCGAACTCTTATAATGTCAACAACTTATCAGATCAGCATGATATCTGCAGTTTGAAGTTTAATGGTTATGGCCAAAACAAGTTGCAAGGGACATTCCTCAAAAAGGATGATCCAAGGATAAACGCATTGATGCAACAAGCAGAGTTGCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAAACGAACCAAAGAGTCTGATGGTCCGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGAGATTGGTTGGAGGACTTGAAGAGTAACAGTGAGGGAATTCAACCATGTTGGAGGAAATTTAAATCCATTCAAAACACAAAGTTCTATGAGGACTATAGTTTCGGATTGTATTCTAGGCAAATGGAATTATATGAAGACTCTCCTGGCAGTTCTGAGTACAGCACAGGATCAACTCTCCTCCCTCATTTGGGTGCCGACAACTCGGAACACTCGCTGCATCAGGAAATTGAAACTGAACTCAAGTCAATACACATTGGAGATCAAAAGGAATGTGAGCAAGGTGTTCTTTCTACTGCAACTTTGGATCAAGATGTTTTCACATTAAATAAGGATCGGATGAACAAAGATGGCATTGTTTCTGCCTCATCAATGACAGAGTTCAGTTCCCCTCTTCAAGTTACACCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCTCAATTTTCCGAAAGCGAGAGGAACTTTCTCATGAAAACACTTGGAATGGAATCTCCATCCTCGCAACCACCACTCTGCAAAAGAGCCCTGCTACAAAGCCTATAA 1476 0.4173 MQDNMKKQKQKQVVVVANNEESNKKKEHRIVMWTQEEDDILREQVGIHGTENWGIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENHTSYTNSNNKRVILQHGHVTDSASESGVSTKKMRRPHIPVVEERINYGDRLHKQNGTQISQQPRAPFAVLPPNSYNVNNLSDQHDICSLKFNGYGQNKLQGTFLKKDDPRINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLKRTKESDGPRCKVPDLQLVDLGDWLEDLKSNSEGIQPCWRKFKSIQNTKFYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIETELKSIHIGDQKECEQGVLSTATLDQDVFTLNKDRMNKDGIVSASSMTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSSQPPLCKRALLQSL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02220 491 CDD SANT 33 76 IPR001005 -
Arst5g02220 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
Arst5g02220 491 SUPERFAMILY Homeodomain-like 31 123 IPR009057 -
Arst5g02220 491 Gene3D - 83 155 - -
Arst5g02220 491 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Arst5g02220 491 PANTHER MYB PROTEIN-RELATED 32 155 - -
Arst5g02220 491 SMART sant 81 129 IPR001005 -
Arst5g02220 491 SMART sant 29 78 IPR001005 -
Arst5g02220 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Arst5g02220 491 Pfam Myb-like DNA-binding domain 33 93 - -
Arst5g02220 491 FunFam Transcription factor MYB124 25 81 - -
Arst5g02220 491 ProSiteProfiles Myb-like domain profile. 33 76 IPR001005 -
Arst5g02220 491 CDD SANT 85 126 IPR001005 -
Arst5g02220 491 Gene3D - 19 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02220 Arst-Chr5 39005120 39011171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02220 1 328 MYB Transcription Factor Family AT2G02820 55.723 3.15e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g02220 Myb_DNA-bind_6 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02220 K09422 - gmx:100807667 674.085