Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02206 ATGATGGATATTGAGGAAGAATCAGTGGGTGTTAAAAAGGCATGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCCGAAGTACATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTTCGCTTGTTTATACTTTCAAACCTTGAGCCATATTTGCTTCTCCTTGAGCCGAAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGGCAAGTATATGGGGCCTTGTTGTGTGCTGTTGGGCAATGTATGCATGAAAAGGCCAAAATCTTCAACAATTTGCTCTCTCCTCCAACACGTGCTTCTTCTAGATCCAAAGCCATGATTGCTATGTCAACCGGCTTGATAGAAATTCCCTGA 423 0.4279 MMDIEEESVGVKKACPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVRLFILSNLEPYLLLLEPKMQPEKQRNETKRQEAWQVYGALLCAVGQCMHEKAKIFNNLLSPPTRASSRSKAMIAMSTGLIEIP 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02206 140 Pfam Helix-loop-helix DNA-binding domain 28 79 IPR011598 GO:0046983
Arst5g02206 140 Gene3D - 20 81 IPR036638 GO:0046983
Arst5g02206 140 PANTHER TRANSCRIPTION FACTOR PIF3 3 57 IPR044273 GO:0003700|GO:0006355
Arst5g02206 140 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 81 IPR011598 GO:0046983
Arst5g02206 140 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02206 Arst-Chr5 38076661 38081324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02206 3 77 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 65.000 3.96e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g02206 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02206 - - ahf:112696927 236.498