Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02205 ATGATGGATATTGAGGAAGAATCAGTGGGTGTTAAAAAGGCATGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCCGAAGTACATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTTCGCTTGTTTATACTTTCAAACCTTGAGCCATATTTGCTTCTCCTTGAGCCGAAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGGCAAGTATATGGGGCCTTGTTGTGTGCTGTTGGGCAATGTATGCATGAAAAGGCCAAAATCTTCAACAATTTGCTCTCTCCTCCAACACGTGCTTCTTCTAGATCCAAAGCCATGATTGCTATGTCAAGGCTGATAGTGGAAAATATTTTCTTCTTGATAGAAGATAATGAACAAATGTATTGTAGCCGGCTTGATAGAAATTCCCTGATAGGAGAGGTTCCTACAAATCTTTGTAAGAGATGA 516 0.4089 MMDIEEESVGVKKACPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVRLFILSNLEPYLLLLEPKMQPEKQRNETKRQEAWQVYGALLCAVGQCMHEKAKIFNNLLSPPTRASSRSKAMIAMSRLIVENIFFLIEDNEQMYCSRLDRNSLIGEVPTNLCKR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02205 171 PANTHER TRANSCRIPTION FACTOR PIF3 3 57 IPR044273 GO:0003700|GO:0006355
Arst5g02205 171 Gene3D - 20 87 IPR036638 GO:0046983
Arst5g02205 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 91 IPR036638 GO:0046983
Arst5g02205 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 81 IPR011598 GO:0046983
Arst5g02205 171 Pfam Helix-loop-helix DNA-binding domain 28 75 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02205 Arst-Chr5 38076655 38081324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02205 3 57 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 79.661 9.96e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g02205 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02205 K12126 K03131 ahf:112696927 303.523