Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst5g02180 | ATGGAGTCATCATCATCAACATCATCATCATCGACAAGAAGAACAACATCAACCGAAATAACATCAACATCGTTGATGGCGATACAGAATTCCTTCGACTCCGTTTATTCCCGCTACGCACGCGAGGCGCTCGACGAATTGCCTGGTAACTTCACCATCACCGACCCATCAATCCCAGGCCACCCAATCATCTTTGCCAGCCAAGGCTTCCTCAAGATGACCGGTTACGACCGAGACGAGGTTGTCGGAAGAGGTGGGGCCATGTTCCAAGGTGATAGAACTTCTAGAAGGTCGTTGATGGAGGTCAGGGAGGCCGTTAGGAATGATCGGAGCTGCCAGGTCAGCTTGCTTAACTACCGCAAGGATGGGACACCCTTTTGGATGCTCTTTCATGTGAGTCCTGTTTTTGGAAGGGATGGTGGCCGGGTTGTTCACTTTGTGGCGGTTCAGGTTCCTTTGGAAGGGAGAAGGCTGAGGAGGCGACGGTCTATTGGGTGCCGGAGAGGTAGCGGCGATGACGGTGGTAGTGGCGATTATGTTCTCGGGTGTTGTAGGAAGGAGGTGTGCAATGATAACAGCTTGGAGGTTGAGTTAGTTTCTTCCATGGATCACGGGTTGGACCATGATACTAAAGAATTGGACAGTGACAAGCCGTGTGAGGCAACTGACGACGAGAAGAGAAGTGTGATGGTTGCAATGGACAACATTTTTTCTGTGCTAACTCACTACAGCGAGTCAACAGGCAGATTGGTATGTAGAAAGAGATGCAGCATACCTGACATGGGTCTTCTTAGCACTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCTGACATGCCTATTGTATATGCCAGTGATGCCTTCTTGAATTTGACAGGTTATGCAAGGGATGAAGTTTTGGGCCGCAATTGTAGATTTTTAGGTGGACCGGATACTGATGACTCAACTTTATATCTGATAAGGGAAAGCATTAAAAATGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAACCTTCTCCACATCTCACCCGTACGTGATGCTTCTGGCAAGGTAGCATACTATGTTGGTGTTCAAATAGAAGATGAGTGTAAAAACGAGGATAGACAAGGCTTGAGCCCTGAGAAGAGGCAGCTTAGTGTGGTTGGTGTGGTGAAGGTTGCTGTCAGGAGTTTATCAATGCATGCTGGATCTTCAAAGTCATAG | 1260 | 0.4675 | MESSSSTSSSSTRRTTSTEITSTSLMAIQNSFDSVYSRYAREALDELPGNFTITDPSIPGHPIIFASQGFLKMTGYDRDEVVGRGGAMFQGDRTSRRSLMEVREAVRNDRSCQVSLLNYRKDGTPFWMLFHVSPVFGRDGGRVVHFVAVQVPLEGRRLRRRRSIGCRRGSGDDGGSGDYVLGCCRKEVCNDNSLEVELVSSMDHGLDHDTKELDSDKPCEATDDEKRSVMVAMDNIFSVLTHYSESTGRLVCRKRCSIPDMGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLNLTGYARDEVLGRNCRFLGGPDTDDSTLYLIRESIKNEQPCTVRILNYRKDRSSFWNLLHISPVRDASGKVAYYVGVQIEDECKNEDRQGLSPEKRQLSVVGVVKVAVRSLSMHAGSSKS | 419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst5g02180 | 419 | CDD | PAS | 63 | 150 | IPR000014 | - | |
| Arst5g02180 | 419 | Pfam | PAS domain | 278 | 377 | IPR000014 | - | |
| Arst5g02180 | 419 | Pfam | PAS domain | 60 | 150 | IPR000014 | - | |
| Arst5g02180 | 419 | PANTHER | PROTEIN TWIN LOV 1 | 27 | 409 | - | - | |
| Arst5g02180 | 419 | SMART | pac_2 | 341 | 382 | IPR001610 | - | |
| Arst5g02180 | 419 | SMART | pac_2 | 113 | 156 | IPR001610 | - | |
| Arst5g02180 | 419 | FunFam | protein TWIN LOV 1 | 278 | 414 | - | - | |
| Arst5g02180 | 419 | CDD | PAS | 287 | 376 | IPR000014 | - | |
| Arst5g02180 | 419 | Gene3D | PAS domain | 278 | 417 | - | - | |
| Arst5g02180 | 419 | Gene3D | PAS domain | 50 | 168 | - | - | |
| Arst5g02180 | 419 | NCBIfam | PAS domain S-box protein | 291 | 376 | IPR000014 | - | |
| Arst5g02180 | 419 | NCBIfam | PAS domain S-box protein | 63 | 146 | IPR000014 | - | |
| Arst5g02180 | 419 | ProSiteProfiles | PAS repeat profile. | 36 | 84 | IPR000014 | - | |
| Arst5g02180 | 419 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Arst5g02180 | 419 | SMART | pas_2 | 38 | 107 | IPR000014 | - | |
| Arst5g02180 | 419 | SMART | pas_2 | 266 | 339 | IPR000014 | - | |
| Arst5g02180 | 419 | ProSiteProfiles | PAS repeat profile. | 291 | 337 | IPR000014 | - | |
| Arst5g02180 | 419 | ProSiteProfiles | PAC domain profile. | 110 | 165 | IPR000700 | - | |
| Arst5g02180 | 419 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 53 | 149 | IPR035965 | - | |
| Arst5g02180 | 419 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 281 | 377 | IPR035965 | - | |
| Arst5g02180 | 419 | ProSiteProfiles | PAC domain profile. | 338 | 392 | IPR000700 | - | |
| Arst5g02180 | 419 | FunFam | Protein TWIN LOV 1 isoform D | 50 | 242 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst5g02180 | Arst-Chr5 | 36245269 | 36249696 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst5g02180 | 268 | 410 | AGC Kinase Gene Family | AT5G58140 | 42.657 | 2.06e-37 | 143 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst5g02180 | - | - | adu:107489171 | 770.385 |