Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02179 ATGGAGTCATCATCATCAACATCATCATCATCGACAAGAAGAACAACATCAACCGAAATAACATCAACATCGTTGATGGCGATACAGAATTCCTTCGACTCCGTTTATTCCCGCTACGCACGCGAGGCGCTCGACGAATTGCCTGGTAACTTCACCATCACCGACCCATCAATCCCAGGCCACCCAATCATCTTTGCCAGCCAAGGCTTCCTCAAGATGACCGGTTACGACCGAGACGAGGTTGTCGGAAGAGGTGGGGCCATGTTCCAAGGTGATAGAACTTCTAGAAGGTCGTTGATGGAGGTCAGGGAGGCCGTTAGGAATGATCGGAGCTGCCAGGTCAGCTTGCTTAACTACCGCAAGGATGGGACACCCTTTTGGATGCTCTTTCATGTGAGTCCTGTTTTTGGAAGGGATGGTGGCCGGGTTGTTCACTTTGTGGCGGTTCAGGTTCCTTTGGAAGGGAGAAGGCTGAGGAGGCGACGGTCTATTGGGTGCCGGAGAGGTAGCGGCGATGACGGTGGTAGTGGCGATTATGTTCTCGGGTGTTGTAGGAAGGAGGTGTGCAATGATAACAGCTTGGAGGTTGAGTTAGTTTCTTCCATGGATCACGGGTTGGACCATGATACTAAAGAATTGGACAGTGACAAGCCGTGTGAGGCAACTGACGACGAGAAGAGAAGTGTGATGGTTGCAATGGACAACATTTTTTCTGTGCTAACTCACTACAGCGAGTCAACAGGCAGATTGTTTTCTCGCAGAACTAATCCGCATTTACCTGACATGCCTATTGTATATGCCAGTGATGCCTTCTTGAATTTGACAGGTTATGCAAGGGATGAAGTTTTGGGCCGCAATTGTAGATTTTTAGGTGGACCGGATACTGATGACTCAACTTTATATCTGATAAGGGAAAGCATTAAAAATGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAACCTTCTCCACATCTCACCCGTACGTGATGCTTCTGGCAAGGTAGCATACTATGTTGGTGTTCAAATAGAAGATGAGTGTAAAAACGAGGATAGACAAGGCTTGAGCCCTGAGAAGAGGCAGCTTAGTGTGGTTGGTGTGGTGAAGGTTGCTGTCAGGAGTTTATCAATGCATGCTGGATCTTCAAAGTCATAG 1179 0.475 MESSSSTSSSSTRRTTSTEITSTSLMAIQNSFDSVYSRYAREALDELPGNFTITDPSIPGHPIIFASQGFLKMTGYDRDEVVGRGGAMFQGDRTSRRSLMEVREAVRNDRSCQVSLLNYRKDGTPFWMLFHVSPVFGRDGGRVVHFVAVQVPLEGRRLRRRRSIGCRRGSGDDGGSGDYVLGCCRKEVCNDNSLEVELVSSMDHGLDHDTKELDSDKPCEATDDEKRSVMVAMDNIFSVLTHYSESTGRLFSRRTNPHLPDMPIVYASDAFLNLTGYARDEVLGRNCRFLGGPDTDDSTLYLIRESIKNEQPCTVRILNYRKDRSSFWNLLHISPVRDASGKVAYYVGVQIEDECKNEDRQGLSPEKRQLSVVGVVKVAVRSLSMHAGSSKS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02179 392 CDD PAS 63 150 IPR000014 -
Arst5g02179 392 FunFam Protein TWIN LOV 1 isoform D 50 242 - -
Arst5g02179 392 ProSiteProfiles PAS repeat profile. 36 84 IPR000014 -
Arst5g02179 392 MobiDBLite consensus disorder prediction 1 22 - -
Arst5g02179 392 PANTHER PROTEIN TWIN LOV 1 255 382 - -
Arst5g02179 392 ProSiteProfiles PAC domain profile. 311 365 IPR000700 -
Arst5g02179 392 SMART pac_2 314 355 IPR001610 -
Arst5g02179 392 SMART pac_2 113 156 IPR001610 -
Arst5g02179 392 NCBIfam PAS domain S-box protein 63 146 IPR000014 -
Arst5g02179 392 NCBIfam PAS domain S-box protein 264 349 IPR000014 -
Arst5g02179 392 ProSiteProfiles PAS repeat profile. 264 310 IPR000014 -
Arst5g02179 392 SMART pas_2 238 312 IPR000014 -
Arst5g02179 392 SMART pas_2 38 107 IPR000014 -
Arst5g02179 392 CDD PAS 260 349 IPR000014 -
Arst5g02179 392 ProSiteProfiles PAC domain profile. 110 165 IPR000700 -
Arst5g02179 392 Pfam PAS domain 60 150 IPR000014 -
Arst5g02179 392 Pfam PAS domain 260 350 IPR000014 -
Arst5g02179 392 SUPERFAMILY PYP-like sensor domain (PAS domain) 260 350 IPR035965 -
Arst5g02179 392 SUPERFAMILY PYP-like sensor domain (PAS domain) 53 149 IPR035965 -
Arst5g02179 392 FunFam protein TWIN LOV 1 253 387 - -
Arst5g02179 392 Gene3D PAS domain 255 390 - -
Arst5g02179 392 Gene3D PAS domain 50 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02179 Arst-Chr5 36245269 36249697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02179 255 383 AGC Kinase Gene Family AT5G58140 43.382 2.26e-33 130