Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02177 ATGAAAGCATACAATTTATTCATTTCACTATGTATTGTTCTCATTTTGCCAACCTTAAATGGCAATACGTTAGAGAATACTACAAATTCGGAAGATGATTTCCAAGTTTCAGACATAGAAGAAAAACTTTGGCAGGAAATGGAAGCAAGAGCTGAAAAGACCAACCGAGAAGCATATTTTACAAACCCATATGAAGTCTCTAAAAACTTCACTTCTATCATTGCGGAAGACGTAGAAGGGCACAATAACACAAGGAGAAGCTTGAAAGGGAAAAAGGCAGGGCTTCCATGCACGGCAACGAACCCCATTGATAGATGTTGGAGATGTGATCCTAACTGGGAAAAAGATCGCCAAAAACTTGCAACTTGTCTTCTGGGTTTTGGAAAAAATACTATTGGTGGAAAAGGTGGTGAGTTTTATACGGTTACGGATCCTTCCGACGACGACATTGTTAATCCAAAACCAGGTACCCTGCGATATGCAGTGACTAGGGATAGACCCTTGTGGATAATCTTTTCACGTAACATGAACATTAAGCTGACCCAGGAGCTCTTGGTGTCAAGTGACAAGACCATTGACGGAAGAGGAGTTGATGTTCACATTAGTAAGGGATGTGGCATCACTATTAACTACGCCCAAAATGTAATCATCCATGGGATCAAGGTATATGACATTAAACCCGGTGTTGGTGGACGTATTAGGTACGGTGAGGGAGAGAAGACTCATATTAGGACACGTAGTGATGGTGATGGAATTAGCATTTATGCTTCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGCACTGATGGTCTCATTGATGCTATTAGAGGTTCCACTGCAATTACCATCTCCAATTGCCATTTTACAGACCATAATAAGGTCATGCTTTTTGGTGCTAATGATTTTTCTCCCGATGATAAAATAATGCAAATCACGGTGGCCTTTAACCACTTTGGTAAAAGATTAGTGCAAAGAATGCCAAGGTGTAGATTTGGATTTTTCCATTTGGTAAATAATGACTATACTCATTGGGAAATGTATGCTATTGGGGGTAGCATGCATCCTATCATTATTAGTGAGGGTAATCGATTTATGGCTTCTAATGACAGCACTGCTAAAGAGGTAACAAAGAGGAACGGACTAGTTGGACTAAATTTATGGCAATGGAAATCAATCAACGATGAATTTATTAATGGAGCATTTTTTAAGGAATCTGGACCTGATCTAGTGCTAAGTCACCTATTCAAACCTGAAGACATCTTGAAAGCAATACCTGGCAGATTTGTGAGTTCCCTAACAGAATTTGCTGGGGCACTTAGGTGTAGGTATGGTCGACCTTGTTAA 1353 0.3976 MKAYNLFISLCIVLILPTLNGNTLENTTNSEDDFQVSDIEEKLWQEMEARAEKTNREAYFTNPYEVSKNFTSIIAEDVEGHNNTRRSLKGKKAGLPCTATNPIDRCWRCDPNWEKDRQKLATCLLGFGKNTIGGKGGEFYTVTDPSDDDIVNPKPGTLRYAVTRDRPLWIIFSRNMNIKLTQELLVSSDKTIDGRGVDVHISKGCGITINYAQNVIIHGIKVYDIKPGVGGRIRYGEGEKTHIRTRSDGDGISIYASSNVWIDHVSMRNCTDGLIDAIRGSTAITISNCHFTDHNKVMLFGANDFSPDDKIMQITVAFNHFGKRLVQRMPRCRFGFFHLVNNDYTHWEMYAIGGSMHPIIISEGNRFMASNDSTAKEVTKRNGLVGLNLWQWKSINDEFINGAFFKESGPDLVLSHLFKPEDILKAIPGRFVSSLTEFAGALRCRYGRPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Arst5g02177 450 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Arst5g02177 450 Pfam Pectate lyase, N terminus 43 88 IPR007524 GO:0030570
Arst5g02177 450 Pfam Pectate lyase 183 367 IPR002022 -
Arst5g02177 450 Gene3D - 100 443 IPR012334 -
Arst5g02177 450 PANTHER PECTATE LYASE 18-RELATED 51 448 IPR045032 GO:0030570
Arst5g02177 450 SMART amb_all 175 373 IPR002022 -
Arst5g02177 450 SUPERFAMILY Pectin lyase-like 122 450 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02177 Arst-Chr5 36081473 36084991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02177 6 450 Polysaccharide Lyase AT1G14420 50.756 5.48e-156 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02177 K01728 - gmx:100798579 546.969