Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02135 ATGGCAACTGAAACCATCAACAAAGGCGAATTCATAATTGAGCATATTGGAGAAGTAATTGATGACGCTTTATATGAAAAAAGGCTTTGGGACATGAAATATGGGGGTGTACAGAATTTTTACATATGTGAGATTCGTAAAGATTTTACTATAGATGCAACCTTCAAAGGAAATATGGCTTGCTTCTTAAACCATGGTTGTGATCCTAATTGTGTTCTCGAGAAGTGGCAAGTAGATGGTGAAACGCGAGTTGGTGTATTTGCTTCCCATACAATAGAAATGGGAGATCCCTTGACATATGATTACAGACAAACGACTAGATGA 324 0.3735 MATETINKGEFIIEHIGEVIDDALYEKRLWDMKYGGVQNFYICEIRKDFTIDATFKGNMACFLNHGCDPNCVLEKWQVDGETRVGVFASHTIEMGDPLTYDYRQTTR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02135 107 SMART set_7 1 105 IPR001214 GO:0005515
Arst5g02135 107 Gene3D SET domain 1 107 IPR046341 -
Arst5g02135 107 ProSiteProfiles SET domain profile. 1 103 IPR001214 GO:0005515
Arst5g02135 107 SUPERFAMILY SET domain 2 104 IPR046341 -
Arst5g02135 107 Pfam SET domain 2 102 IPR001214 GO:0005515
Arst5g02135 107 PANTHER SET DOMAIN PROTEINS 2 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02135 Arst-Chr5 32773970 32778434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02135 2 102 C2H2 Transcription Factor Family AT2G23740 34.746 5.14e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Arst5g02135 SET 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02135 - - adu:110281087 223.787