Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g02002 ATGCCGGGGCATCGGTCCAAGTCGTCGGAGAAGCACGCCGACGGCGGCGGCGCCAAGCCACTCCGGCGGGACCCATACGAGGTCCTCGGCGTCTCCCGCAACTCCACCGATCAGGAAATCAAAACCGCTTACCGCAAAATGGCTCTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAGGCAGCTGATATGTTCAAAGAGGTTACCTTTTCATACAATATATTGTCAGATCCTGACAAGCGTCGTCAGTTCGACACAGCTGGTTTTGAGGCTGTTGAATCGGATAACCAAGAGTTGGAGTTGGACCTTTCAAGTTTGGGTGCTGTGAATACAATGTTTGCTGCACTTTTTAGTAAACTCGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCCCTCAATGGTGTAGTGACCATTCGTCCACTTCCATTGGGACAGTTTATTTCTAGAAGGGTTGAGAAGCAATGTGCACATTTCTATTCAGTTACAATAACAGAAGAGGAAGCACAAGCTGGATTTGTTTGTCGAGTGCACTCATCAGACAAAAGCAAGTTCAAGTTGCTATATTTTGATCAAGAAGAAAATGGTGGATTAAGTCTTGCTCTCCAGGAAGACTGCGCAAAAACAGGGAAAGTTACCTCTGCTGGAATGTTTTTTCTTGGGTTTCCTGTTTATCGATTGGATCAGACCATGAACTCAATATCTGCTGCAAAGGATCCAGATACATCATTTTTCAGAAAGCTTGAAGGGTTTCAACCCTGTGAATTGACAGAACTGAAGGCTGGTACCCATGTGTTTGCAGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGCTCTATGCGCTGCACCATTTAGTGAAGAAAAGGAAAATTTAAGAAACATTGAAGCTCAAATTTTGTCTAAAAGGGCAGAGATATCAAAGTTTGAGACAGAGTACCGAGAGGTTCTGGCGCAGTTCACAGAGATGACAAGTAGATATGCAAATGAAATGCAAGAAATTGATGAACTATTAAAACAACGAAATGAAATACATGCAGCGTACACTGTTGCTCCTTTGAAACGGAGTTCAAGTAAGAGTCGGAATAAAAGTTCTTCCAATGAGGCGAAAGAAGAGGGCCAGACAAAAGAGAAGAGGAATACAAGAGAACGACCAAAGAAGAAGAGATGGTACAACATCCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAG 1239 0.4286 MPGHRSKSSEKHADGGGAKPLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQFDTAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTIRPLPLGQFISRRVEKQCAHFYSVTITEEEAQAGFVCRVHSSDKSKFKLLYFDQEENGGLSLALQEDCAKTGKVTSAGMFFLGFPVYRLDQTMNSISAAKDPDTSFFRKLEGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFETEYREVLAQFTEMTSRYANEMQEIDELLKQRNEIHAAYTVAPLKRSSSKSRNKSSSNEAKEEGQTKEKRNTRERPKKKRWYNIHLRVDKRKAC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g02002 412 ProSitePatterns Nt-dnaJ domain signature. 66 85 IPR018253 -
Arst5g02002 412 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 411 - -
Arst5g02002 412 Coils Coil 329 356 - -
Arst5g02002 412 FunFam Chaperone protein dnaJ 16 4 106 - -
Arst5g02002 412 MobiDBLite consensus disorder prediction 1 32 - -
Arst5g02002 412 Coils Coil 294 321 - -
Arst5g02002 412 SMART dnaj_3 23 81 IPR001623 -
Arst5g02002 412 MobiDBLite consensus disorder prediction 1 21 - -
Arst5g02002 412 CDD DnaJ 24 78 IPR001623 -
Arst5g02002 412 MobiDBLite consensus disorder prediction 358 412 - -
Arst5g02002 412 MobiDBLite consensus disorder prediction 373 389 - -
Arst5g02002 412 Pfam DnaJ domain 24 86 IPR001623 -
Arst5g02002 412 Gene3D DnaJ domain 12 107 IPR036869 -
Arst5g02002 412 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Arst5g02002 412 MobiDBLite consensus disorder prediction 390 404 - -
Arst5g02002 412 PRINTS DnaJ domain signature 81 100 IPR001623 -
Arst5g02002 412 PRINTS DnaJ domain signature 61 81 IPR001623 -
Arst5g02002 412 PRINTS DnaJ domain signature 26 44 IPR001623 -
Arst5g02002 412 PRINTS DnaJ domain signature 44 59 IPR001623 -
Arst5g02002 412 SUPERFAMILY Chaperone J-domain 23 93 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g02002 Arst-Chr5 27565247 27570008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g02002 22 87 C2H2 Transcription Factor Family AT1G74250 39.437 2.56e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g02002 - - gmx:100800929 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g02002 5 27565247 27570008 Arst5g02002 5 27565247 27570008 ECH