Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01995 ATGACGACTCGAATAGCGCCTGGTGTTGGCGCCAACTTGCTTGGCCAACACTCTGCCGAGAGGAATCAGGACGCCACCGCCTATGTTGGCAATCTCGACCCCCAAGTTCCCGAGGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAACACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGTTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAACGGCACGGCACGCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCTACTGCGCAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACTGTTGCTGTTCCGGTACCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCACCCCCTCAAGCAGCAGCATTTCAGCCTATGCCAGGAGCTGGGCAACCAACATGGCATCAACAACAGCCCGGACTCCCGCCTGGAATGCCTGTTTGGCGACCACAACCACCGCCACCGCAGCAACAGGGTGGACGACCTATGGCATATCCTCAACCCTCAATGCCTCCACCTTCCTATAGCCAGATGCCACCACCTCAATGA 999 0.4965 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPTWHQQQPGLPPGMPXVWRPQPPPPQQQGGRPMAYPQPSMPPPSYSQMPPPQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01995 333 CDD RRM1_SF3B4 28 100 IPR034158 -
Arst5g01995 333 CDD RRM2_SF3B4 111 193 IPR034159 -
Arst5g01995 333 MobiDBLite consensus disorder prediction 248 273 - -
Arst5g01995 333 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Arst5g01995 333 FunFam splicing factor 3B subunit 4 109 200 - -
Arst5g01995 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Arst5g01995 333 MobiDBLite consensus disorder prediction 294 333 - -
Arst5g01995 333 FunFam Splicing factor 3b subunit 4 16 108 - -
Arst5g01995 333 MobiDBLite consensus disorder prediction 195 333 - -
Arst5g01995 333 MobiDBLite consensus disorder prediction 208 236 - -
Arst5g01995 333 Gene3D - 112 200 IPR012677 -
Arst5g01995 333 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 330 - -
Arst5g01995 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Arst5g01995 333 SMART rrm1_1 26 99 IPR000504 GO:0003723
Arst5g01995 333 SMART rrm1_1 113 187 IPR000504 GO:0003723
Arst5g01995 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Arst5g01995 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Arst5g01995 333 Gene3D - 16 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01995 Arst-Chr5 27156710 27162456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01995 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 28.788 7.69e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01995 K12831 - gmx:100791039 503.056