Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01973 ATGCATTACAATGATGGGAAATCTTTGCAGATGCTCTCTTCGACAAAGCAACCGGGGGAGAAAATTTCTTTTTGTCCTATTGTCGACAGGAACGATGCTGATGGGGAAGTGAATATTCAAAAAGTTAAGAGAAGGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTTGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAAAATGAAGGTAGAGCAGAACCTTATAGATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGTCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGATGTCATTTGCCAGTTGGATGCTCTTAGTTCTGTGGGCAGGATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAATGCAAGTTGCCTGAAGCATTCCCCGATAATGACATTATACTCTGCGACGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCGACCCACCGTTGGACACTGAAAATATTCCTCCTGGAGACCAATGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCGACTTCTCCTTGGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTACTGTACCAGATGATTGTGCCGCTTTATTAAATCCGGAAGAAGAATGGCCGTCAGATGATCCAGAAGATGATGATTATAACCCGGACAGGAGAGAAAACACTCACAACATCAATGCAGAAGGCACTGATGAAAGTCCATCTGATTCAAGCAGCTCTATCAGTCTTTCGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCCATGAGCCTTGAATATCTTTCTGTTAATAGTTGCGTTGATTCTGATGGATATGGGGAAATAGTATGCAGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCTGCTAATACACTTATGACGCTGCACGAAAGCGATAATAAATTTCCGAATAATGAGAACAACGATACAGTAAGAGAGGGCACACACACACATATAAAAAGATCTTGCTTCAGAATTCCACATCATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGACAATGAACTTCCTCCGAGATCCGTGAAGGAACACATTTCAAAAGAGTTGGGAATCGATGCTGCAAAGGTTAGCAAGTGGTTTAAAAATGCTCGTTACTTAGCTCTTAAAACCAGGAAGCATCAAGTCGAAGGAGGAGAGCTGCCTTTGAGTTTGTTGTGTAAGACCTCGAAGGGTTCCAGTTTACAAAATGTGGACAAAGATGAGATTTTGCAGAAATCAAAGGCCTCTAAAATTGCGATGGTTCATTCACCGAATAATGGTAACGGTATTACCGATAGACAGAAAGTGAAGTCATCTGGCAGTATTTGGAAAAAAAGGCAACCGGAAATATCTCCTGCTAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGGGAGTGATGATGTTGGCTTGAAGAAGCTGCTACAAGAAAAGAAAAGAAAGATGGAATTTGTGTTTGGAGGAGACTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGGCTAAACTAGATAGCATGAAGGTTAAATTAATTGAAGTTCAAAACCACAGAGCAAAGGGTGCAAAGGAACCATGTGTTATATATGTGCCCACAGCTCAGTTAAGGGAAAAAGGTTGA 1881 0.4184 MHYNDGKSLQMLSSTKQPGEKISFCPIVDRNDADGEVNIQKVKRRRRRKRRRDNVDLDDALRLQRRTRYLLIKMKVEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVICQLDALSSVGRIEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQCWFCKFCECKMEILEATNAHLGTDFSLDSTWQDVFKEEATVPDDCAALLNPEEEWPSDDPEDDDYNPDRRENTHNINAEGTDESPSDSSSSISLSSLNDEYSPVDKAMSLEYLSVNSCVDSDGYGEIVCSRRQRKAVDYRKLYDEMFKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKFPNNENNDTVREGTHTHIKRSCFRIPHHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARYLALKTRKHQVEGGELPLSLLCKTSKGSSLQNVDKDEILQKSKASKIAMVHSPNNGNGITDRQKVKSSGSIWKKRQPEISPAKTAENGNKDLEEGSDDVGLKKLLQEKKRKMEFVFGGDSKAAELEFERLSKLKAKLDSMKVKLIEVQNHRAKGAKEPCVIYVPTAQLREKG 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01973 626 MobiDBLite consensus disorder prediction 504 550 - -
Arst5g01973 626 SMART PHD_3 150 203 IPR001965 -
Arst5g01973 626 Coils Coil 584 604 - -
Arst5g01973 626 CDD homeodomain 403 464 IPR001356 GO:0003677
Arst5g01973 626 MobiDBLite consensus disorder prediction 504 520 - -
Arst5g01973 626 Pfam PHD-finger 150 205 IPR019787 -
Arst5g01973 626 CDD PHD_PRHA_like 150 202 IPR045876 -
Arst5g01973 626 Gene3D - 402 466 - -
Arst5g01973 626 FunFam pathogenesis-related homeodomain protein-like 142 202 - -
Arst5g01973 626 SUPERFAMILY Homeodomain-like 403 464 IPR009057 -
Arst5g01973 626 MobiDBLite consensus disorder prediction 273 292 - -
Arst5g01973 626 SMART HOX_1 402 464 IPR001356 GO:0003677
Arst5g01973 626 MobiDBLite consensus disorder prediction 244 292 - -
Arst5g01973 626 SUPERFAMILY FYVE/PHD zinc finger 142 208 IPR011011 -
Arst5g01973 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 199 IPR013083 -
Arst5g01973 626 ProSiteProfiles 'Homeobox' domain profile. 400 460 IPR001356 GO:0003677
Arst5g01973 626 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 11 625 - -
Arst5g01973 626 MobiDBLite consensus disorder prediction 349 370 - -
Arst5g01973 626 FunFam pathogenesis-related homeodomain protein 402 466 - -
Arst5g01973 626 ProSitePatterns Zinc finger PHD-type signature. 151 202 IPR019786 -
Arst5g01973 626 ProSiteProfiles Zinc finger PHD-type profile. 148 205 IPR019787 -
Arst5g01973 626 Pfam Homeodomain 410 455 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01973 Arst-Chr5 26463186 26468576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01973 50 464 Homeobox Transcription Factor Family AT4G29940 56.047 4.86e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Arst5g01973 Homeodomain 4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01973 - - gmx:100787118 838.95