Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01972 ATGCGAGATACTGAGAAAAAGTTAAATAAGAGAGGATTTAGAAAATCCAGTCACTCAAGGGAACATACTGATTCAAAGCTTGATTTGTCACCGAGATTCGAAACAAGTAGTAACAAAGGCCAAGGGAAGAAGCAGAAATTGAAATCGAAACCTCACAAACTCGTTGTTTGCACAGCCACATCAAGGGGCACAGCAACTGATTCTTCTTCCATCAAGGGGTCAATCAAAGGTGCTTCAAGTGAAAAATTGATTGTTGGACAAAATATGCATTACAATGATGGGAAATCTTTGCAGATGCTCTCTTCGACAAAGCAACCGGGGGAGAAAATTTCTTTTTGTCCTATTGTCGACAGGAACGATGCTGATGGGGAAGTGAATATTCAAAAAGTTAAGAGAAGGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTTGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAAAATGAAGGTAGAGCAGAACCTTATAGATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGTCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGATGTCATTTGCCAGTTGGATGCTCTTAGTTCTGTGGGCAGGATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAATGCAAGTTGCCTGAAGCATTCCCCGATAATGACATTATACTCTGCGACGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCGACCCACCGTTGGACACTGAAAATATTCCTCCTGGAGACCAATGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCGACTTCTCCTTGGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTACTGTACCAGATGATTGTGCCGCTTTATTAAATCCGGAAGAAGAATGGCCGTCAGATGATCCAGAAGATGATGATTATAACCCGGACAGGAGAGAAAACACTCACAACATCAATGCAGAAGGCACTGATGAAAGTCCATCTGATTCAAGCAGCTCTATCAGTCTTTCGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCCATGAGCCTTGAATATCTTTCTGTTAATAGTTGCGTTGATTCTGATGGATATGGGGAAATAGTATGCAGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCTGCTAATACACTTATGACGCTGCACGAAAGCGATAATAAATTTCCGAATAATGAGAACAACGATACAGTAAGAGAGGGCACACACACACATATAAAAAGATCTTGCTTCAGAATTCCACATCATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGACAATGAACTTCCTCCGAGATCCGTGAAGGAACACATTTCAAAAGAGTTGGGAATCGATGCTGCAAAGGTTAGCAAGTGGTTTAAAAATGCTCGTTACTTAGCTCTTAAAACCAGGAAGCATCAAGTCGAAGGAGGAGAGCTGCCTTTGAGTTTGTTGTGTAAGACCTCGAAGGGTTCCAGTTTACAAAATGTGGACAAAGATGAGATTTTGCAGAAATCAAAGGCCTCTAAAATTGCGATGGTTCATTCACCGAATAATGGTAACGGTATTACCGATAGACAGAAAGTGAAGTCATCTGGCAGTATTTGGAAAAAAAGGCAACCGGAAATATCTCCTGCTAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGGGAGTGATGATGTTGGCTTGAAGAAGCTGCTACAAGAAAAGAAAAGAAAGATGGAATTTGTGTTTGGAGGAGACTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGGCTAAACTAGATAGCATGAAGGTTAAATTAATTGAAGTTCAAAACCACAGAGCAAAGGGTGCAAAGGAACCATGTGTTATATATGTGCCCACAGCTCAGTTAAGGGAAAAAGGTTGA 2145 0.4154 MRDTEKKLNKRGFRKSSHSREHTDSKLDLSPRFETSSNKGQGKKQKLKSKPHKLVVCTATSRGTATDSSSIKGSIKGASSEKLIVGQNMHYNDGKSLQMLSSTKQPGEKISFCPIVDRNDADGEVNIQKVKRRRRRKRRRDNVDLDDALRLQRRTRYLLIKMKVEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVICQLDALSSVGRIEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQCWFCKFCECKMEILEATNAHLGTDFSLDSTWQDVFKEEATVPDDCAALLNPEEEWPSDDPEDDDYNPDRRENTHNINAEGTDESPSDSSSSISLSSLNDEYSPVDKAMSLEYLSVNSCVDSDGYGEIVCSRRQRKAVDYRKLYDEMFKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKFPNNENNDTVREGTHTHIKRSCFRIPHHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARYLALKTRKHQVEGGELPLSLLCKTSKGSSLQNVDKDEILQKSKASKIAMVHSPNNGNGITDRQKVKSSGSIWKKRQPEISPAKTAENGNKDLEEGSDDVGLKKLLQEKKRKMEFVFGGDSKAAELEFERLSKLKAKLDSMKVKLIEVQNHRAKGAKEPCVIYVPTAQLREKG 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01972 714 SUPERFAMILY FYVE/PHD zinc finger 230 296 IPR011011 -
Arst5g01972 714 Coils Coil 672 692 - -
Arst5g01972 714 Pfam PHD-finger 238 293 IPR019787 -
Arst5g01972 714 CDD homeodomain 491 552 IPR001356 GO:0003677
Arst5g01972 714 MobiDBLite consensus disorder prediction 1 52 - -
Arst5g01972 714 MobiDBLite consensus disorder prediction 592 608 - -
Arst5g01972 714 FunFam pathogenesis-related homeodomain protein-like 230 290 - -
Arst5g01972 714 Gene3D - 490 554 - -
Arst5g01972 714 MobiDBLite consensus disorder prediction 592 638 - -
Arst5g01972 714 SMART PHD_3 238 291 IPR001965 -
Arst5g01972 714 SMART HOX_1 490 552 IPR001356 GO:0003677
Arst5g01972 714 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Arst5g01972 714 CDD PHD_PRHA_like 238 290 IPR045876 -
Arst5g01972 714 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Arst5g01972 714 MobiDBLite consensus disorder prediction 332 380 - -
Arst5g01972 714 FunFam pathogenesis-related homeodomain protein 490 554 - -
Arst5g01972 714 MobiDBLite consensus disorder prediction 437 458 - -
Arst5g01972 714 Pfam Homeodomain 498 543 IPR001356 GO:0003677
Arst5g01972 714 MobiDBLite consensus disorder prediction 361 380 - -
Arst5g01972 714 SUPERFAMILY Homeodomain-like 491 552 IPR009057 -
Arst5g01972 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Arst5g01972 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 30 713 - -
Arst5g01972 714 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01972 Arst-Chr5 26463185 26468576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01972 138 552 Homeobox Transcription Factor Family AT4G29940 56.047 1.45e-147 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Arst5g01972 Homeodomain 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01972 - - gmx:100787118 883.248