Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01926 ATGGGTATTGCCAACAAGAAAGCCTTACCTGGTCAAAGGACTCCGGGTAACGTTGGAAGGAGTTTAAAAGTCTTAAACTGCAACAATCCAACATTCCAAACCCTGCCTATGGCTTTGAGGGCGGCTGCGGTTGCGGCGCAGCCTTCGTCGCGCACGGTGGAACCCAAATCCTCCCTCTTCGTTTCCGGGCTTAACAAACGGACGACATCTGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCAAAGTTGTTCGCACTAGGGTGATGATCGATAGAGAAGGTTGTTCTAAAGGGTATGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAGCATGAATGGAAAGTTTTTGGATGGTTGGATTATATTTGTAGAGTATGCCAAATCTATCCCAGAACCTACACAGCAATCTCACCGGTATCTCCGGCAGTAG 447 0.4698 MGIANKKALPGQRTPGNVGRSLKVLNCNNPTFQTLPMALRAAAVAAQPSSRTVEPKSSLFVSGLNKRTTSERLLQEFSKFGKVVRTRVMIDREGCSKGYGFVQYATIEEAAKGIESMNGKFLDGWIIFVEYAKSIPEPTQQSHRYLRQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01926 148 CDD RRM_SF 59 130 - -
Arst5g01926 148 SMART rrm1_1 58 130 IPR000504 GO:0003723
Arst5g01926 148 PANTHER NUCLEOLAR PROTEIN 8 47 140 - -
Arst5g01926 148 SUPERFAMILY RNA-binding domain, RBD 34 145 IPR035979 GO:0003676
Arst5g01926 148 Gene3D - 37 144 IPR012677 -
Arst5g01926 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 124 IPR000504 GO:0003723
Arst5g01926 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 134 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01926 Arst-Chr5 25420458 25428029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01926 57 136 Eukaryotic Initiation Factors Gene Family AT1G49760 35.802 6.41e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01926 - - adu:107488830 281.182