Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01891 ATGATCGGTAAAACAAATGGGTCGGGTCGCCGGATTCTTACTTTTCCGGCGGTTCATCCATGCGTGAATGTTTCTCTCTCTACCGTAATCGCTTCCCTCATAGCCCTCTCTCGCTCCATCTCGAGTTTCCAATGGAGAACCTTCCCTTGCAACAAGCGAAACGCGAGGAACGCCATTCGTTTGGTTCATCTTCTCCAACCTTTCATCGACGAGATCCGGGAAAACCAATCGGGACTTCCGGATTCGGCTACGCTTTCGTTTTCCGAGCTCCACTTGACCTTCCAGAAGCTTCTTTTCCTATTGGAAGATGCTACACGTGAAGGTGCAAGGTTGACGATGTTGATGGAGTCGGATCGAGTCGCCACACAGTTTGTGGTTTTGTCAAGATCAATTGCCACGGCTTTGGATGTTTTCCCTTTTAATTCTGTCCATGTGTCCGAGGAAGTTAGAGACCAGGTTGTGTTGTTGATGAGGCAAGCGAGGAATGCAGTGTTTGAAGTTGAGGTTGACGATAAAAAGGCTTTGACTTGTGTTAGGTCGGTTTTGACCAGGTTTGAGAACCGGGTTGAACCGAATGAGGGTGATCTAAGGTTGGTTCTTGATTATATTGGGGTTAGGAAGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTCTTGCTGCTGAAATTGGGTTTCAGAGTAACAGTGAGGAGAAGTCAAAGGTTGGATTTTTATGTAGCTTGATGGGGTTCATGTGCTATTGTAGGTGCTTGGTGATGGAAGTTGTTGATGGTGAAGGTGGTAACAGCAACCCAAAACCTGAAGCCGGAAGAAAAATCAGTGTTGAAGATGAGAAAATTCTGAGTGGGCTCAACCCTGATGATTTTAGATGTCCAATCTCTCTAGAGCTGATGAGTGATCCAGTGACTATAGAAACAGGTCACACTTATGATCGTTCCTCAATTCTCAAATGGTTCAGGAGTGGGAATGCAATATGTCCCAAGACAGGTAAGAGACTTATAAGCACGGAATTGGTCCCAAATTTGGTGCTTAAGAGGCTGATTCAGCAGCATTGCTATGTTAATGGCATTCCTTTTATTACCGATTTGGGTAAAAGGAAGAGTGGCGACATCACTAGGACATTGCATCCAGGGAGTTTTGCTGCAGAGGGTGCCATGAAGATGCTTGCTAGTTCTCTCAGTGCCAGGCTTGAGAATGGAACAGCCATTGAAGAAAAGAACCGAGCCGCGTTTGAGATGAGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCCGGTTCGGTTTCTCATTTGTTGAAGATGTTGTCACTTAGGGATTCGTCAGCGCAAGAGAATGCCATTGCAGCACTTCTGAACCTCTCAAAGTACCCCAAGAGTAGAGCTCTAATGGCTGAGAGTTTGGGGTTAGCACTCATTGTTCGGGTCCTGAAGAACGGGCTAAAGATTGAAGCTCGCCAGCACGCTGCCGCGGTGTTGTTCTACCTTGCATCAGATGCTGAGTATAGGAAACTGATAGGAGAGGAACCAGACGCAATTCCTTCATTGGTGAGGCTGATCAAAGATGGTTCGGATCGCACCAAAAAGAATGGCTTGGTTGCAATGTATGGCATCCTCATGAACCAACATGAGAACCATAAGAGGGTACTTGCTGCAGGGGGAATCCCTTTGCTTATTGACATATTAAGAACATGTGAGAAAGAAGATCTTCTCACAGATTCACTAGCGATTCTGGCAACTCTCGCAGAGAAGAATGATGGAGCAATGGCGATTCTTCAATGGGGAGTTCTGCATATAGCTGTTCAGATTCTTAGTTCTTCCACTTCAAGGATGGGGAAGGAGCACTGTGTGACTCTGCTGCTTTCTCTATCAATGCATGGAGGAGTGGATGTGGTTGCTGATTTGGTAAAGAGCACTTCGCTTATGGGGTCCTTATATTCCCAACTCAGTGAAGGCACATCTAGAGCAAGCAAGAAGGCCAGTGCCCTCATCAAGGTCCTCCATGATTTTTCTGAAAGGAGGTCCTCTGGCTTCAAGCCTTCAGTTATTCCACAAGAACAATTTGTTCACGTGTGGTAA 2088 0.4593 MIGKTNGSGRRILTFPAVHPCVNVSLSTVIASLIALSRSISSFQWRTFPCNKRNARNAIRLVHLLQPFIDEIRENQSGLPDSATLSFSELHLTFQKLLFLLEDATREGARLTMLMESDRVATQFVVLSRSIATALDVFPFNSVHVSEEVRDQVVLLMRQARNAVFEVEVDDKKALTCVRSVLTRFENRVEPNEGDLRLVLDYIGVRKWSECNKEVKFLAAEIGFQSNSEEKSKVGFLCSLMGFMCYCRCLVMEVVDGEGGNSNPKPEAGRKISVEDEKILSGLNPDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLISTELVPNLVLKRLIQQHCYVNGIPFITDLGKRKSGDITRTLHPGSFAAEGAMKMLASSLSARLENGTAIEEKNRAAFEMRLLSKTSIFNRSCLVEAGSVSHLLKMLSLRDSSAQENAIAALLNLSKYPKSRALMAESLGLALIVRVLKNGLKIEARQHAAAVLFYLASDAEYRKLIGEEPDAIPSLVRLIKDGSDRTKKNGLVAMYGILMNQHENHKRVLAAGGIPLLIDILRTCEKEDLLTDSLAILATLAEKNDGAMAILQWGVLHIAVQILSSSTSRMGKEHCVTLLLSLSMHGGVDVVADLVKSTSLMGSLYSQLSEGTSRASKKASALIKVLHDFSERRSSGFKPSVIPQEQFVHVW 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01891 695 FunFam RING-type E3 ubiquitin transferase 366 681 - -
Arst5g01891 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 356 IPR013083 -
Arst5g01891 695 SUPERFAMILY ARM repeat 399 669 IPR016024 -
Arst5g01891 695 SUPERFAMILY RING/U-box 276 358 - -
Arst5g01891 695 Gene3D - 384 678 IPR011989 -
Arst5g01891 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 599 IPR000225 GO:0005515
Arst5g01891 695 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Arst5g01891 695 FunFam RING-type E3 ubiquitin transferase 284 356 - -
Arst5g01891 695 SMART arm_5 460 501 IPR000225 GO:0005515
Arst5g01891 695 SMART arm_5 418 459 IPR000225 GO:0005515
Arst5g01891 695 SMART arm_5 544 586 IPR000225 GO:0005515
Arst5g01891 695 SMART arm_5 502 543 IPR000225 GO:0005515
Arst5g01891 695 Pfam U-box domain 285 350 IPR003613 GO:0004842|GO:0016567
Arst5g01891 695 PANTHER U BOX DOMAIN-CONTAINING 52 670 - -
Arst5g01891 695 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Arst5g01891 695 CDD RING-Ubox_PUB 285 337 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01891 Arst-Chr5 24491830 24494241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01891 1 695 U-box Gene Family AT1G60190 47.525 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01891 - - gmx:100795816 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01891 5 24491830 24494241 Arst5g01891 5 24491830 24494241 ECH