Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01828 ATGGTGGTGGTGATAGAGCAGCAAGAGAATGAGGATCGAAACGCAAATCCCTCCAATACTGCTGGTAACGATGCTTCCGACGGTTTTGAAACGGCCAGCGACACCGACCTGGGCAGCGAAACCGGAGGTGATGACGTTGGCGCTAGCAGCCATGATCAACAGCTCGAACAACAGCAACATCAACAACAGCAGCCGAAGCCAGAGCATTCGGAGCCGGAACCTGAACAGAGTGTTTCTCCAAGTAATAGTTTCTCTAGAGATCCCTTGATCAATGAGGAATTGGAGAAGAAAGCATTGGTTCAAGCAAATGAGGCAAAGGCAGAAGGGAATAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTCTACAAGTTGCACCTGACATGCCTTCATCTGTTGAAATACTCTCAATATGTCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCATTAGATCTGAATCCAGTGTATATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATGATGAAGGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGGTTTGGGATGAGTGTCGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 825 0.4388 MVVVIEQQENEDRNANPSNTAGNDASDGFETASDTDLGSETGGDDVGASSHDQQLEQQQHQQQQPKPEHSEPEPEQSVSPSNSFSRDPLINEELEKKALVQANEAKAEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEILSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREMMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01828 274 Gene3D Tetratricopeptide repeat domain 47 241 IPR011990 GO:0005515
Arst5g01828 274 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Arst5g01828 274 SMART tpr_5 102 135 IPR019734 GO:0005515
Arst5g01828 274 SMART tpr_5 177 210 IPR019734 GO:0005515
Arst5g01828 274 SMART tpr_5 143 176 IPR019734 GO:0005515
Arst5g01828 274 MobiDBLite consensus disorder prediction 1 86 - -
Arst5g01828 274 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 33 274 - -
Arst5g01828 274 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Arst5g01828 274 MobiDBLite consensus disorder prediction 9 38 - -
Arst5g01828 274 MobiDBLite consensus disorder prediction 46 65 - -
Arst5g01828 274 Pfam Tetratricopeptide repeat 178 210 IPR013105 -
Arst5g01828 274 Pfam Tetratricopeptide repeat 147 174 IPR019734 GO:0005515
Arst5g01828 274 SUPERFAMILY TPR-like 102 220 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01828 Arst-Chr5 22594065 22598128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01828 102 233 Calmodulin-binding Proteins AT3G25230 37.143 2.23e-14 70.9