Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01817 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGCCGACTACCACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCTGGAATTCAACAGCAGCAACCACAGCACAACAACGAGGCCATGGCATCGACCATGATGAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTGCAAGCCTACATCGATTGCCAGAAGGTCGGCGCACCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCGCGAAAACGACCTTTTCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTGGACGNAGTGCAGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAGGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCAATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGAGCTGTGTCTTCAGAGGAAGATTTTAGTGCTGGAGATGGTGATGGAGGTCAAGATGGTCAATCAAGGGGTGAAGATCGTGAGCTTAAGGACAGGCTTCTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTCCTTCAATGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCTGACAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAACAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGTGGCCGATTCCTTCCTGATGAATGA 972 0.499 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQPQHNNEAMASTMMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDLFKRDDVVSTCFGADPELDXVQETYCELLVKYKSDLARPFDEATSFLNKIEMQLSNLCCNGASVPTLSDDGAVSSEEDFSAGDGDGGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGGRFLPDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01817 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Arst5g01817 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Arst5g01817 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Arst5g01817 323 MobiDBLite consensus disorder prediction 190 221 - -
Arst5g01817 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Arst5g01817 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Arst5g01817 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Arst5g01817 323 Gene3D - 239 312 - -
Arst5g01817 323 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Arst5g01817 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 310 - -
Arst5g01817 323 SUPERFAMILY Homeodomain-like 241 312 IPR009057 -
Arst5g01817 323 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Arst5g01817 323 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Arst5g01817 323 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Arst5g01817 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Arst5g01817 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01817 Arst-Chr5 22218600 22227980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01817 1 323 Homeobox Transcription Factor Family AT1G23380 62.500 3.36e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst5g01817 KNOX2 9.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01817 - - gmx:100794719 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01817 5 22218600 22227980 Arst5g01817 5 22218600 22227980 ECH