Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01763 ATGGAAGAGAAAGATGAAGATGAAGTGGTGTCATGTTCTTCTTCTTCCGATGAGGAATACGAAGAATGTTCCTCTCCGGCGGACGACCAACGCAAATCGCAGAATGTGGATGCTCTCCTCAGGGGCAACCTCATAGTTAAGAGGCAGTCACTGCTACCTCGAGTTCTATCAGTGGGAGGAGCAGGTGCTTGTAGAAAGCCCTTTAAACCTCCGTCGTCCAATCACACTTACGATAATGATAATGCGCTTACCCGTCGCCTTTCCGCCCGCAAGAGGTTTGTCCCTTGGGGTTCTTCTACTTGTTCACTCCGACCCCCTCTCTTGGACTTGAACGCAAATGAAAATGCAAGCTCCTTTCACCTTGCCGACGACCAGCCTCACCACAAAATCGAACTTCCTTTGCCCCCTGGGATTGATCCTCTCATACTCTGGCGCCCCCTCGACGAGAATCAAACATCCAATTTAACCACCATTGCAGTTGACCCGTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGAGTTCAGTTCATGTTTGATTGTGTCTCTGGCCTGTGTAGCGCAGACAATATAGATGGATGCATTTTGGCTGATGATATGGGTTTGGGGAAGACATTGCAGTCAATTACATTACTATATACTCTAATTTGCCAAGGATTTGATGGGAATCCACTGGTTAGAAAGGCTATCATTGTAACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAGATCAAGAAGTGGATTGGAGAAAGAGTTCGTCTTCTTGCTCTCTGTGAAACCACTAGAGAAGATGTTCTCTCTGGGATTGACAAGTTTACAAGGCCCCACAGCACTATACAGGTGCTCATTGTTTCGTATGAGACATTCCGAATGCATTCGTCAAAGTTTAGCTCTAGTGGCTCTTGTGACCTCCTTATCTGTGATGAGGCTCACAGACTAAAGAATGATCAGACGATAACAAACAGGGCATTGGCAGCTCTTCCATGTAAACGTAGAATTCTATTGTCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTTTGCAATGGTTAATTTTACTAATCCTGGAATACTGGGTGATATTGCCAATTTTCGACGTTACTATGAGGCTCCAATCATCAGTGGAAGAGAACCAAATGCCACTACAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAATTAAGTGCCAAAGTAAATCGGTTCATATTAAGGAGGACTAATGCATTATTATCTAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCCTTACAGTCCGACCTTTACAAACATTTTATACAATCCAAAAATGTTAGACGTGCAATTAATGAAGAACAGAAGCAATCCAAGATCTTGGCCTACATAACAGCTCTCAAAAAGCTATGCAATCATCCAAAGTTGATCTACGATACCATAAAGAGTGGGAGTCCCGGAAATTCAGGTTTTGAAGACTGCCTTCGATTCTTTCCTCCACAAATGCTATCTGGAAGGTCTGGCTCACGGACAGGAGAGCATGGAGCTTGGGTCGAGCTATCTGGGAAAATGCATGTCTTAGCAAGGTTACTTGCTCATTTACGTCAGAGGACAACTGATCGCATTGTCTTGGTCTCAAACTACACTCAGACTCTCGATCTTTTTGCGCAATTGTGTCGGGAACAAGGGTACCCTTACCTGAGGCTTGATGGTGCTACATCAATAAAAAAAAGGCAGAAGTTGGTCAACTTCTTTAATGACCCATCTAAGGACGAATTTGTTTTTCTGTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTGTTGTTTGATCCTGACTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTCTGGAGGGATGGACAGAAGAAAAGAGTATATATTTATAGATTTTTGAGTACTGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGTTGCAAAAGGTCATTCAGAAGGAGCAAACTGATAGCCTTGCGGCACAGGGTAACTTCCTTTCAACAGAGGATCTTCGCAATTTGTTCACCTTTCATGAGAATGCCAAGTCGGAGATTCATGAAAAGATGTGTTGCACTCGATGTCAAACAGATGATGCACCTCAAACTACTGAAAAGAAATATGCAGCCCCTGATTGTGAATCTGATGAAGAAACCACTGACATAGGTGGATTTGCAGAAATTGCTGGCTGCTTAGAGAAGTTAAAAAGGTCAGAAAAGCAGGTGGGGACACCATTGGAAGAAGATTTAGGCAGTTGGGGCCATCACTTTTCCTCGGCTTCTGTACCGGATGCCATCCTTCAGGCTTCAGCTGGTGATGAGGTGACCTTTGTGTTCACAAATCAAGTTAATGGACGGCTGGTACCTATTGAATCTACAAGCAGTTCCGCACCGCGGCAAAAGGAAACTAATAAGGAATTACCCAAGTTAAAGCTTCGCTTCACACGAAAGCCCGCTATTTTTTCTGAGGATAATAATAAATTGTCACTGCGGTCCGTTTCTGGTGTTGCTTGTGCATCATCTTCCTCTCCCAATACCTTTAAAAAGGAAAAACTGCATTCTATTGGAATTACCAAGGGCATCTCAACGAATGTAGCAGCATTTAAGACCGATTACTCCGTTGTAAATAAATCACCACCACAGAAAAGATCACGTCCTGCAAATGTCGATACCCAATAA 2736 0.4382 MEEKDEDEVVSCSSSSDEEYEECSSPADDQRKSQNVDALLRGNLIVKRQSLLPRVLSVGGAGACRKPFKPPSSNHTYDNDNALTRRLSARKRFVPWGSSTCSLRPPLLDLNANENASSFHLADDQPHHKIELPLPPGIDPLILWRPLDENQTSNLTTIAVDPLLVRFLRPHQREGVQFMFDCVSGLCSADNIDGCILADDMGLGKTLQSITLLYTLICQGFDGNPLVRKAIIVTPTSLVSNWEAEIKKWIGERVRLLALCETTREDVLSGIDKFTRPHSTIQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIANFRRYYEAPIISGREPNATTEEKKLGAERSAELSAKVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVRRAINEEQKQSKILAYITALKKLCNHPKLIYDTIKSGSPGNSGFEDCLRFFPPQMLSGRSGSRTGEHGAWVELSGKMHVLARLLAHLRQRTTDRIVLVSNYTQTLDLFAQLCREQGYPYLRLDGATSIKKRQKLVNFFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQTDSLAAQGNFLSTEDLRNLFTFHENAKSEIHEKMCCTRCQTDDAPQTTEKKYAAPDCESDEETTDIGGFAEIAGCLEKLKRSEKQVGTPLEEDLGSWGHHFSSASVPDAILQASAGDEVTFVFTNQVNGRLVPIESTSSSAPRQKETNKELPKLKLRFTRKPAIFSEDNNKLSLRSVSGVACASSSSPNTFKKEKLHSIGITKGISTNVAAFKTDYSVVNKSPPQKRSRPANVDTQ 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01763 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 687 IPR001650 -
Arst5g01763 911 FunFam DNA repair and recombination protein RAD54-like 513 685 - -
Arst5g01763 911 MobiDBLite consensus disorder prediction 1 15 - -
Arst5g01763 911 FunFam DNA repair and recombination protein RAD54 140 408 - -
Arst5g01763 911 Gene3D - 431 700 - -
Arst5g01763 911 CDD SF2_C_SNF 520 648 - -
Arst5g01763 911 PANTHER SNF2/RAD54 FAMILY MEMBER 64 832 - -
Arst5g01763 911 Pfam SNF2-related domain 171 477 IPR000330 GO:0005524|GO:0140658
Arst5g01763 911 SMART ultradead3 164 372 IPR014001 -
Arst5g01763 911 MobiDBLite consensus disorder prediction 1 34 - -
Arst5g01763 911 FunFam Predicted protein 431 505 - -
Arst5g01763 911 CDD DEXHc_RAD54 168 409 - -
Arst5g01763 911 Gene3D - 409 721 IPR027417 -
Arst5g01763 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 409 IPR027417 -
Arst5g01763 911 SMART helicmild6 553 637 IPR001650 -
Arst5g01763 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 800 IPR027417 -
Arst5g01763 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 359 IPR014001 -
Arst5g01763 911 Pfam Helicase conserved C-terminal domain 528 636 IPR001650 -
Arst5g01763 911 Gene3D - 144 408 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01763 Arst-Chr5 20993411 21000796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01763 149 695 RAD5 or RAD16-like Gene Family AT1G02670 25.550 4.43e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst5g01763 SNF2_N 9.1e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01763 K10875 - gmx:100781631 1335.09