Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01712 ATGGCTTCAAATTCAAGCTCGAAGAAAAACAAAGGTCGCCAAAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCGCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGACCGCCACACCTGGACGCCGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGGTGCAGGAGATGAACCGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAGGTGGCGCTGGAGGAGCTGAAGAAGACCGTTACTTGCCACTTCGAGAAGCTTCGTATTAATAAAGACCCTGTGGCTGTGGGGAATTATACTCCTAATAACATGATGCCGCTGCCTGTGCCTGTGCCGATGCCGGTGCCGTTGCCGCCAATATTTTTTTCGTCGCTGTTTCAAAACTCTCAAATGCATAATCATCATCAAGCATTTGAAGATGAGATCCCGTACCACCAATTTTATAGCTACACTGCCATGTTACAGCAGGGAGGAGGATCGTTCCTCTTTGGACCATACACTCGTAACAACTAA 762 0.5118 MASNSSSKKNKGRQKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQVQEMNRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEELKKTVTCHFEKLRINKDPVAVGNYTPNNMMPLPVPVPMPVPLPPIFFSSLFQNSQMHNHHQAFEDEIPYHQFYSYTAMLQQGGGSFLFGPYTRNN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01712 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Arst5g01712 253 Gene3D - 24 84 IPR036879 GO:0003677|GO:0046983
Arst5g01712 253 Coils Coil 100 134 - -
Arst5g01712 253 PANTHER MADS BOX PROTEIN 13 164 - -
Arst5g01712 253 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Arst5g01712 253 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Arst5g01712 253 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Arst5g01712 253 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Arst5g01712 253 CDD MADS_MEF2_like 12 79 IPR033896 GO:0000977|GO:0045944
Arst5g01712 253 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Arst5g01712 253 SUPERFAMILY SRF-like 12 90 IPR036879 GO:0003677|GO:0046983
Arst5g01712 253 Gene3D - 87 176 - -
Arst5g01712 253 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01712 Arst-Chr5 20212736 20213737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01712 8 165 Type I MADS-box Gene Family AT5G60440 49.080 9.48e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst5g01712 SRF-TF 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01712 - - adu:107488602 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01712 5 20212736 20213737 Arst5g01712 5 20212736 20213737 ECH
Arst5g01712 5 20212736 20213737 Arst9g03397 9 111127342 111127875 PCT