Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01697 ATGCATTGTCGCTTGTGTCTCTGCCGCCTACGCTATGACAATGTCTCTGCATGCGTTCTTCTTTTAGCATCTCTGCCTACCATCTTTGTCATAGTTGTTCCACCTCTACCCACCCTCTCCTTTGTCCCTGTGCTGCTTATTGCACCAAGGATGGCTTCAAATTCAAGCTCGAAGAAAAACAAAGGTCGCCACAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCGCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGCCCGCCACACCTGGACGCTGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGTTGCAGGAGATGAACCGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAGGTGGCGCTGGAGAAGCTGAAGAAGACCGTTACTTGCCACTTCGAGAAGCTTCGTATTAATAAAGACCCTGTGACTGTGGGGAATTATACTCCTAATAACATGATGCGGCTGCCTGTGCATGTGCCGATGCAAGTGTCGTTGCCGATATTTTTCTCGTCACTGTTTCAAAACTCTCAAATGCATAATCATCATCAAGCATTTCAAGATGAGATCCCGTACCACCAATTTTATAGCTACACTGCCATGTTGCAACAGGGAGGAGGATCCTCCTTTGAACCATACACTCGTCATAACTAA 906 0.5011 MHCRLCLCRLRYDNVSACVLLLASLPTIFVIVVPPLPTLSFVPVLLIAPRMASNSSSKKNKGRHKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQLQEMNRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEKLKKTVTCHFEKLRINKDPVTVGNYTPNNMMRLPVHVPMQVSLPIFFSSLFQNSQMHNHHQAFQDEIPYHQFYSYTAMLQQGGGSSFEPYTRHN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01697 301 FunFam Agamous-like MADS-box protein AGL62 73 138 - -
Arst5g01697 301 Coils Coil 150 184 - -
Arst5g01697 301 Gene3D - 74 134 IPR036879 GO:0003677|GO:0046983
Arst5g01697 301 PANTHER MADS BOX PROTEIN 63 214 - -
Arst5g01697 301 SMART madsneu2 61 120 IPR002100 GO:0003677|GO:0046983
Arst5g01697 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 72 117 IPR002100 GO:0003677|GO:0046983
Arst5g01697 301 SUPERFAMILY SRF-like 62 140 IPR036879 GO:0003677|GO:0046983
Arst5g01697 301 Gene3D - 137 226 - -
Arst5g01697 301 CDD MADS_MEF2_like 62 129 IPR033896 GO:0000977|GO:0045944
Arst5g01697 301 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Arst5g01697 301 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Arst5g01697 301 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Arst5g01697 301 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01697 Arst-Chr5 20018940 20022245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01697 58 215 Type I MADS-box Gene Family AT5G60440 48.466 4.01e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst5g01697 SRF-TF 3.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01697 - - adu:107488596 602.438